Merge branch 'develop' into bug/JAL-4235_gradle_task_jalviewjsTranspile_does_not_fail...

[jalview.git] / src / jalview / bin / JalviewLite.java

diff --git a/src/jalview/bin/JalviewLite.java b/src/jalview/bin/JalviewLite.java
index e8be95f..b73fffc 100644 (file)
--- a/src/jalview/bin/JalviewLite.java
+++ b/src/jalview/bin/JalviewLite.java
@@ -292,8 +292,9 @@ public class JalviewLite extends Applet
     {
       if (debug)
       {
-        jalview.bin.Console.errPrintln("Selecting region using separator string '"
-                + separator + "'");
+        jalview.bin.Console
+                .errPrintln("Selecting region using separator string '"
+                        + separator + "'");
       }
     }
     // deparse fields
@@ -396,8 +397,8 @@ public class JalviewLite extends Applet
             }
             if (debug)
             {
-              jalview.bin.Console.errPrintln("Range '" + cl + "' deparsed as [" + from
-                      + "," + to + "]");
+              jalview.bin.Console.errPrintln("Range '" + cl
+                      + "' deparsed as [" + from + "," + to + "]");
             }
           }
           else
@@ -457,8 +458,9 @@ public class JalviewLite extends Applet
           }
           else
           {
-            jalview.bin.Console.errPrintln("ERROR: Invalid Point selection '" + cl
-                    + "' deparsed as [" + r + "]");
+            jalview.bin.Console
+                    .errPrintln("ERROR: Invalid Point selection '" + cl
+                            + "' deparsed as [" + r + "]");
           }
         }
       }
@@ -956,8 +958,8 @@ public class JalviewLite extends Applet
               + ((af == null) ? "All frames"
                       : "Just views for "
                               + af.getAlignViewport().getSequenceSetId()));
-      jalview.bin.Console.errPrintln("There are now " + javascriptListeners.size()
-              + " listeners in total.");
+      jalview.bin.Console.errPrintln("There are now "
+              + javascriptListeners.size() + " listeners in total.");
     }
   }
 
@@ -1003,8 +1005,8 @@ public class JalviewLite extends Applet
               + ((af == null) ? "All frames"
                       : "Just views for "
                               + af.getAlignViewport().getSequenceSetId()));
-      jalview.bin.Console.errPrintln("There are now " + javascriptListeners.size()
-              + " listeners in total.");
+      jalview.bin.Console.errPrintln("There are now "
+              + javascriptListeners.size() + " listeners in total.");
     }
   }
 
@@ -1039,10 +1041,11 @@ public class JalviewLite extends Applet
             .addStructureViewerListener(mol);
     if (debug)
     {
-      jalview.bin.Console.errPrintln("Added a javascript structure viewer listener '"
-              + listener + "'");
-      jalview.bin.Console.errPrintln("There are now " + javascriptListeners.size()
-              + " listeners in total.");
+      jalview.bin.Console
+              .errPrintln("Added a javascript structure viewer listener '"
+                      + listener + "'");
+      jalview.bin.Console.errPrintln("There are now "
+              + javascriptListeners.size() + " listeners in total.");
     }
   }
 
@@ -1087,7 +1090,8 @@ public class JalviewLite extends Applet
         rprt = debug;
         if (debug)
         {
-          jalview.bin.Console.errPrintln("Removed listener '" + listener + "'");
+          jalview.bin.Console
+                  .errPrintln("Removed listener '" + listener + "'");
         }
       }
       else
@@ -1097,8 +1101,8 @@ public class JalviewLite extends Applet
     }
     if (rprt)
     {
-      jalview.bin.Console.errPrintln("There are now " + javascriptListeners.size()
-              + " listeners in total.");
+      jalview.bin.Console.errPrintln("There are now "
+              + javascriptListeners.size() + " listeners in total.");
     }
   }
 
@@ -1189,8 +1193,9 @@ public class JalviewLite extends Applet
           }
         } catch (NumberFormatException e)
         {
-          jalview.bin.Console.errPrintln("Ignoring invalid residue number string '"
-                  + pdbResNum + "'");
+          jalview.bin.Console
+                  .errPrintln("Ignoring invalid residue number string '"
+                          + pdbResNum + "'");
         }
 
       }
@@ -1220,9 +1225,10 @@ public class JalviewLite extends Applet
 
         } catch (Exception ex)
         {
-          jalview.bin.Console.errPrintln("Couldn't parse integer arguments (topRow='"
-                  + topRow + "' and leftHandColumn='" + leftHandColumn
-                  + "')");
+          jalview.bin.Console
+                  .errPrintln("Couldn't parse integer arguments (topRow='"
+                          + topRow + "' and leftHandColumn='"
+                          + leftHandColumn + "')");
           ex.printStackTrace();
         }
       }
@@ -1251,8 +1257,9 @@ public class JalviewLite extends Applet
 
         } catch (Exception ex)
         {
-          jalview.bin.Console.errPrintln("Couldn't parse integer arguments (topRow='"
-                  + topRow + "')");
+          jalview.bin.Console
+                  .errPrintln("Couldn't parse integer arguments (topRow='"
+                          + topRow + "')");
           ex.printStackTrace();
         }
 
@@ -1421,7 +1428,8 @@ public class JalviewLite extends Applet
       JSObject scriptObject = JSObject.getWindow(this);
       if (debug && scriptObject != null)
       {
-        jalview.bin.Console.errPrintln("Applet has Javascript callback support.");
+        jalview.bin.Console
+                .errPrintln("Applet has Javascript callback support.");
       }
 
     } catch (Exception ex)
@@ -1465,7 +1473,8 @@ public class JalviewLite extends Applet
         separator = sep;
         if (debug)
         {
-          jalview.bin.Console.errPrintln("Separator set to '" + separator + "'");
+          jalview.bin.Console
+                  .errPrintln("Separator set to '" + separator + "'");
         }
       }
       else
@@ -1573,7 +1582,8 @@ public class JalviewLite extends Applet
     {
       if (tries > 0)
       {
-        jalview.bin.Console.errPrintln("LiveConnect request thread going to sleep.");
+        jalview.bin.Console
+                .errPrintln("LiveConnect request thread going to sleep.");
       }
       try
       {
@@ -1584,7 +1594,8 @@ public class JalviewLite extends Applet
       ;
       if (tries++ > 0)
       {
-        jalview.bin.Console.errPrintln("LiveConnect request thread woken up.");
+        jalview.bin.Console
+                .errPrintln("LiveConnect request thread woken up.");
       }
       try
       {
@@ -1632,8 +1643,9 @@ public class JalviewLite extends Applet
                   "Calling oninit callback '" + initjscallback + "'.");
         } catch (Exception e)
         {
-          jalview.bin.Console.errPrintln("Exception when executing _oninit callback '"
-                  + initjscallback + "'.");
+          jalview.bin.Console
+                  .errPrintln("Exception when executing _oninit callback '"
+                          + initjscallback + "'.");
           e.printStackTrace();
         }
       }
@@ -1884,8 +1896,8 @@ public class JalviewLite extends Applet
       {
         if (debug)
         {
-          jalview.bin.Console.errPrintln("Prepended document base '" + documentBase
-                  + "' to make: '" + withDocBase + "'");
+          jalview.bin.Console.errPrintln("Prepended document base '"
+                  + documentBase + "' to make: '" + withDocBase + "'");
         }
         protocol = DataSourceType.URL;
         return withDocBase;
@@ -2475,7 +2487,8 @@ public class JalviewLite extends Applet
         return rtn;
       } catch (Exception ex)
       {
-        jalview.bin.Console.outPrintln("Exception checking resources: " + f + " " + ex);
+        jalview.bin.Console.outPrintln(
+                "Exception checking resources: " + f + " " + ex);
         return false;
       }
     }
@@ -2745,7 +2758,8 @@ public class JalviewLite extends Applet
     this.separator = separator;
     if (debug)
     {
-      jalview.bin.Console.errPrintln("Default Separator now: '" + separator + "'");
+      jalview.bin.Console
+              .errPrintln("Default Separator now: '" + separator + "'");
     }
   }
 
@@ -2901,8 +2915,8 @@ public class JalviewLite extends Applet
     Color col = ColorUtils.parseColourString(colprop);
     if (col == null)
     {
-      jalview.bin.Console.errPrintln("Couldn't parse '" + colprop + "' as a colour for "
-              + colparam);
+      jalview.bin.Console.errPrintln("Couldn't parse '" + colprop
+              + "' as a colour for " + colparam);
     }
     return (col == null) ? defcolour : col;
   }