OPENED("Apply the following output arguments to all of the last --open'ed set of linked arguments.",
Opt.BOOLEAN, Opt.MULTI, Opt.NOACTION),
QUIT("After all files have been opened, appended and output, quit Jalview. In ‑‑headless mode this already happens.",
- Opt.UNARY),
+ Opt.UNARY, Opt.BOOTSTRAP),
// secret options
TESTOUTPUT(
UNSETARGFILE(
"Unsets the current value of the argfilename. Inserted after argfile contents.",
Opt.UNARY, Opt.LINKED, Opt.MULTI, Opt.PRIVATE, Opt.NOACTION),
+ THREADS("When opening multiple alignment windows, set a limit to alignments being processed at one time.",
+ Opt.BOOTSTRAP, Opt.STRING, Opt.NODUPLICATEVALUES, Opt.NOACTION),
// these last two have no purpose in the normal Jalview application but are
// used by jalview.bin.Launcher to set memory settings. They are not used by