/*\r
- * This class was automatically generated with \r
+ * This class was automatically generated with\r
* <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
* Schema.\r
* $Id$\r
*/\r
\r
+/*\r
+* Jalview - A Sequence Alignment Editor and Viewer\r
+* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+*\r
+* This program is free software; you can redistribute it and/or\r
+* modify it under the terms of the GNU General Public License\r
+* as published by the Free Software Foundation; either version 2\r
+* of the License, or (at your option) any later version.\r
+*\r
+* This program is distributed in the hope that it will be useful,\r
+* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+* GNU General Public License for more details.\r
+*\r
+* You should have received a copy of the GNU General Public License\r
+* along with this program; if not, write to the Free Software\r
+* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+*/\r
+\r
package jalview.binding;\r
\r
//---------------------------------/\r
\r
/**\r
* Class Annotation.\r
- * \r
+ *\r
* @version $Revision$ $Date$\r
*/\r
public class Annotation implements java.io.Serializable {\r
\r
/**\r
* Method addAnnotationElement\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param vAnnotationElement\r
*/\r
public void addAnnotationElement(jalview.binding.AnnotationElement vAnnotationElement)\r
throws java.lang.IndexOutOfBoundsException\r
{\r
_annotationElementList.addElement(vAnnotationElement);\r
- } //-- void addAnnotationElement(jalview.binding.AnnotationElement) \r
+ } //-- void addAnnotationElement(jalview.binding.AnnotationElement)\r
\r
/**\r
* Method addAnnotationElement\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param index\r
* @param vAnnotationElement\r
*/\r
throws java.lang.IndexOutOfBoundsException\r
{\r
_annotationElementList.insertElementAt(vAnnotationElement, index);\r
- } //-- void addAnnotationElement(int, jalview.binding.AnnotationElement) \r
+ } //-- void addAnnotationElement(int, jalview.binding.AnnotationElement)\r
\r
/**\r
* Method deleteGraph\r
- * \r
+ *\r
*/\r
public void deleteGraph()\r
{\r
this._has_graph= false;\r
- } //-- void deleteGraph() \r
+ } //-- void deleteGraph()\r
\r
/**\r
* Method enumerateAnnotationElement\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return Enumeration\r
*/\r
public java.util.Enumeration enumerateAnnotationElement()\r
{\r
return _annotationElementList.elements();\r
- } //-- java.util.Enumeration enumerateAnnotationElement() \r
+ } //-- java.util.Enumeration enumerateAnnotationElement()\r
\r
/**\r
* Method getAnnotationElement\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param index\r
* @return AnnotationElement\r
*/\r
if ((index < 0) || (index > _annotationElementList.size())) {\r
throw new IndexOutOfBoundsException();\r
}\r
- \r
+\r
return (jalview.binding.AnnotationElement) _annotationElementList.elementAt(index);\r
- } //-- jalview.binding.AnnotationElement getAnnotationElement(int) \r
+ } //-- jalview.binding.AnnotationElement getAnnotationElement(int)\r
\r
/**\r
* Method getAnnotationElement\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return AnnotationElement\r
*/\r
public jalview.binding.AnnotationElement[] getAnnotationElement()\r
mArray[index] = (jalview.binding.AnnotationElement) _annotationElementList.elementAt(index);\r
}\r
return mArray;\r
- } //-- jalview.binding.AnnotationElement[] getAnnotationElement() \r
+ } //-- jalview.binding.AnnotationElement[] getAnnotationElement()\r
\r
/**\r
* Method getAnnotationElementCount\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return int\r
*/\r
public int getAnnotationElementCount()\r
{\r
return _annotationElementList.size();\r
- } //-- int getAnnotationElementCount() \r
+ } //-- int getAnnotationElementCount()\r
\r
/**\r
* Returns the value of field 'description'.\r
- * \r
+ *\r
* @return String\r
* @return the value of field 'description'.\r
*/\r
public java.lang.String getDescription()\r
{\r
return this._description;\r
- } //-- java.lang.String getDescription() \r
+ } //-- java.lang.String getDescription()\r
\r
/**\r
* Returns the value of field 'graph'.\r
- * \r
+ *\r
* @return boolean\r
* @return the value of field 'graph'.\r
*/\r
public boolean getGraph()\r
{\r
return this._graph;\r
- } //-- boolean getGraph() \r
+ } //-- boolean getGraph()\r
\r
/**\r
* Returns the value of field 'label'.\r
- * \r
+ *\r
* @return String\r
* @return the value of field 'label'.\r
*/\r
public java.lang.String getLabel()\r
{\r
return this._label;\r
- } //-- java.lang.String getLabel() \r
+ } //-- java.lang.String getLabel()\r
\r
/**\r
* Method hasGraph\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean hasGraph()\r
{\r
return this._has_graph;\r
- } //-- boolean hasGraph() \r
+ } //-- boolean hasGraph()\r
\r
/**\r
* Method isValid\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @return boolean\r
*/\r
public boolean isValid()\r
return false;\r
}\r
return true;\r
- } //-- boolean isValid() \r
+ } //-- boolean isValid()\r
\r
/**\r
* Method marshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param out\r
*/\r
public void marshal(java.io.Writer out)\r
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
- \r
+\r
Marshaller.marshal(this, out);\r
- } //-- void marshal(java.io.Writer) \r
+ } //-- void marshal(java.io.Writer)\r
\r
/**\r
* Method marshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param handler\r
*/\r
public void marshal(org.xml.sax.ContentHandler handler)\r
throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
- \r
+\r
Marshaller.marshal(this, handler);\r
- } //-- void marshal(org.xml.sax.ContentHandler) \r
+ } //-- void marshal(org.xml.sax.ContentHandler)\r
\r
/**\r
* Method removeAllAnnotationElement\r
- * \r
+ *\r
*/\r
public void removeAllAnnotationElement()\r
{\r
_annotationElementList.removeAllElements();\r
- } //-- void removeAllAnnotationElement() \r
+ } //-- void removeAllAnnotationElement()\r
\r
/**\r
* Method removeAnnotationElement\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param index\r
* @return AnnotationElement\r
*/\r
java.lang.Object obj = _annotationElementList.elementAt(index);\r
_annotationElementList.removeElementAt(index);\r
return (jalview.binding.AnnotationElement) obj;\r
- } //-- jalview.binding.AnnotationElement removeAnnotationElement(int) \r
+ } //-- jalview.binding.AnnotationElement removeAnnotationElement(int)\r
\r
/**\r
* Method setAnnotationElement\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param index\r
* @param vAnnotationElement\r
*/\r
throw new IndexOutOfBoundsException();\r
}\r
_annotationElementList.setElementAt(vAnnotationElement, index);\r
- } //-- void setAnnotationElement(int, jalview.binding.AnnotationElement) \r
+ } //-- void setAnnotationElement(int, jalview.binding.AnnotationElement)\r
\r
/**\r
* Method setAnnotationElement\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param annotationElementArray\r
*/\r
public void setAnnotationElement(jalview.binding.AnnotationElement[] annotationElementArray)\r
for (int i = 0; i < annotationElementArray.length; i++) {\r
_annotationElementList.addElement(annotationElementArray[i]);\r
}\r
- } //-- void setAnnotationElement(jalview.binding.AnnotationElement) \r
+ } //-- void setAnnotationElement(jalview.binding.AnnotationElement)\r
\r
/**\r
* Sets the value of field 'description'.\r
- * \r
+ *\r
* @param description the value of field 'description'.\r
*/\r
public void setDescription(java.lang.String description)\r
{\r
this._description = description;\r
- } //-- void setDescription(java.lang.String) \r
+ } //-- void setDescription(java.lang.String)\r
\r
/**\r
* Sets the value of field 'graph'.\r
- * \r
+ *\r
* @param graph the value of field 'graph'.\r
*/\r
public void setGraph(boolean graph)\r
{\r
this._graph = graph;\r
this._has_graph = true;\r
- } //-- void setGraph(boolean) \r
+ } //-- void setGraph(boolean)\r
\r
/**\r
* Sets the value of field 'label'.\r
- * \r
+ *\r
* @param label the value of field 'label'.\r
*/\r
public void setLabel(java.lang.String label)\r
{\r
this._label = label;\r
- } //-- void setLabel(java.lang.String) \r
+ } //-- void setLabel(java.lang.String)\r
\r
/**\r
* Method unmarshal\r
- * \r
- * \r
- * \r
+ *\r
+ *\r
+ *\r
* @param reader\r
* @return Object\r
*/\r
throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
{\r
return (jalview.binding.Annotation) Unmarshaller.unmarshal(jalview.binding.Annotation.class, reader);\r
- } //-- java.lang.Object unmarshal(java.io.Reader) \r
+ } //-- java.lang.Object unmarshal(java.io.Reader)\r
\r
/**\r
* Method validate\r
- * \r
+ *\r
*/\r
public void validate()\r
throws org.exolab.castor.xml.ValidationException\r
{\r
org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
validator.validate(this);\r
- } //-- void validate() \r
+ } //-- void validate()\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff