--- /dev/null
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package jalview.binding;\r
+\r
+ //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+import org.xml.sax.ContentHandler;\r
+\r
+/**\r
+ * Class AnnotationElement.\r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public class AnnotationElement implements java.io.Serializable {\r
+\r
+\r
+ //--------------------------/\r
+ //- Class/Member Variables -/\r
+ //--------------------------/\r
+\r
+ /**\r
+ * Field _position\r
+ */\r
+ private int _position;\r
+\r
+ /**\r
+ * keeps track of state for field: _position\r
+ */\r
+ private boolean _has_position;\r
+\r
+ /**\r
+ * Field _displayCharacter\r
+ */\r
+ private java.lang.String _displayCharacter;\r
+\r
+ /**\r
+ * Field _description\r
+ */\r
+ private java.lang.String _description;\r
+\r
+ /**\r
+ * Field _secondaryStructure\r
+ */\r
+ private java.lang.String _secondaryStructure;\r
+\r
+ /**\r
+ * Field _value\r
+ */\r
+ private float _value;\r
+\r
+ /**\r
+ * keeps track of state for field: _value\r
+ */\r
+ private boolean _has_value;\r
+\r
+\r
+ //----------------/\r
+ //- Constructors -/\r
+ //----------------/\r
+\r
+ public AnnotationElement() {\r
+ super();\r
+ } //-- jalview.binding.AnnotationElement()\r
+\r
+\r
+ //-----------/\r
+ //- Methods -/\r
+ //-----------/\r
+\r
+ /**\r
+ * Method deletePosition\r
+ * \r
+ */\r
+ public void deletePosition()\r
+ {\r
+ this._has_position= false;\r
+ } //-- void deletePosition() \r
+\r
+ /**\r
+ * Method deleteValue\r
+ * \r
+ */\r
+ public void deleteValue()\r
+ {\r
+ this._has_value= false;\r
+ } //-- void deleteValue() \r
+\r
+ /**\r
+ * Returns the value of field 'description'.\r
+ * \r
+ * @return String\r
+ * @return the value of field 'description'.\r
+ */\r
+ public java.lang.String getDescription()\r
+ {\r
+ return this._description;\r
+ } //-- java.lang.String getDescription() \r
+\r
+ /**\r
+ * Returns the value of field 'displayCharacter'.\r
+ * \r
+ * @return String\r
+ * @return the value of field 'displayCharacter'.\r
+ */\r
+ public java.lang.String getDisplayCharacter()\r
+ {\r
+ return this._displayCharacter;\r
+ } //-- java.lang.String getDisplayCharacter() \r
+\r
+ /**\r
+ * Returns the value of field 'position'.\r
+ * \r
+ * @return int\r
+ * @return the value of field 'position'.\r
+ */\r
+ public int getPosition()\r
+ {\r
+ return this._position;\r
+ } //-- int getPosition() \r
+\r
+ /**\r
+ * Returns the value of field 'secondaryStructure'.\r
+ * \r
+ * @return String\r
+ * @return the value of field 'secondaryStructure'.\r
+ */\r
+ public java.lang.String getSecondaryStructure()\r
+ {\r
+ return this._secondaryStructure;\r
+ } //-- java.lang.String getSecondaryStructure() \r
+\r
+ /**\r
+ * Returns the value of field 'value'.\r
+ * \r
+ * @return float\r
+ * @return the value of field 'value'.\r
+ */\r
+ public float getValue()\r
+ {\r
+ return this._value;\r
+ } //-- float getValue() \r
+\r
+ /**\r
+ * Method hasPosition\r
+ * \r
+ * \r
+ * \r
+ * @return boolean\r
+ */\r
+ public boolean hasPosition()\r
+ {\r
+ return this._has_position;\r
+ } //-- boolean hasPosition() \r
+\r
+ /**\r
+ * Method hasValue\r
+ * \r
+ * \r
+ * \r
+ * @return boolean\r
+ */\r
+ public boolean hasValue()\r
+ {\r
+ return this._has_value;\r
+ } //-- boolean hasValue() \r
+\r
+ /**\r
+ * Method isValid\r
+ * \r
+ * \r
+ * \r
+ * @return boolean\r
+ */\r
+ public boolean isValid()\r
+ {\r
+ try {\r
+ validate();\r
+ }\r
+ catch (org.exolab.castor.xml.ValidationException vex) {\r
+ return false;\r
+ }\r
+ return true;\r
+ } //-- boolean isValid() \r
+\r
+ /**\r
+ * Method marshal\r
+ * \r
+ * \r
+ * \r
+ * @param out\r
+ */\r
+ public void marshal(java.io.Writer out)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ \r
+ Marshaller.marshal(this, out);\r
+ } //-- void marshal(java.io.Writer) \r
+\r
+ /**\r
+ * Method marshal\r
+ * \r
+ * \r
+ * \r
+ * @param handler\r
+ */\r
+ public void marshal(org.xml.sax.ContentHandler handler)\r
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ \r
+ Marshaller.marshal(this, handler);\r
+ } //-- void marshal(org.xml.sax.ContentHandler) \r
+\r
+ /**\r
+ * Sets the value of field 'description'.\r
+ * \r
+ * @param description the value of field 'description'.\r
+ */\r
+ public void setDescription(java.lang.String description)\r
+ {\r
+ this._description = description;\r
+ } //-- void setDescription(java.lang.String) \r
+\r
+ /**\r
+ * Sets the value of field 'displayCharacter'.\r
+ * \r
+ * @param displayCharacter the value of field 'displayCharacter'\r
+ */\r
+ public void setDisplayCharacter(java.lang.String displayCharacter)\r
+ {\r
+ this._displayCharacter = displayCharacter;\r
+ } //-- void setDisplayCharacter(java.lang.String) \r
+\r
+ /**\r
+ * Sets the value of field 'position'.\r
+ * \r
+ * @param position the value of field 'position'.\r
+ */\r
+ public void setPosition(int position)\r
+ {\r
+ this._position = position;\r
+ this._has_position = true;\r
+ } //-- void setPosition(int) \r
+\r
+ /**\r
+ * Sets the value of field 'secondaryStructure'.\r
+ * \r
+ * @param secondaryStructure the value of field\r
+ * 'secondaryStructure'.\r
+ */\r
+ public void setSecondaryStructure(java.lang.String secondaryStructure)\r
+ {\r
+ this._secondaryStructure = secondaryStructure;\r
+ } //-- void setSecondaryStructure(java.lang.String) \r
+\r
+ /**\r
+ * Sets the value of field 'value'.\r
+ * \r
+ * @param value the value of field 'value'.\r
+ */\r
+ public void setValue(float value)\r
+ {\r
+ this._value = value;\r
+ this._has_value = true;\r
+ } //-- void setValue(float) \r
+\r
+ /**\r
+ * Method unmarshal\r
+ * \r
+ * \r
+ * \r
+ * @param reader\r
+ * @return Object\r
+ */\r
+ public static java.lang.Object unmarshal(java.io.Reader reader)\r
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+ {\r
+ return (jalview.binding.AnnotationElement) Unmarshaller.unmarshal(jalview.binding.AnnotationElement.class, reader);\r
+ } //-- java.lang.Object unmarshal(java.io.Reader) \r
+\r
+ /**\r
+ * Method validate\r
+ * \r
+ */\r
+ public void validate()\r
+ throws org.exolab.castor.xml.ValidationException\r
+ {\r
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+ validator.validate(this);\r
+ } //-- void validate() \r
+\r
+}\r
git://source.jalview.org / jalview.git / blobdiff