Merge branch 'develop' into features/JAL-1705_ensembl

[jalview.git] / src / jalview / binding / JSeq.java

diff --git a/src/jalview/binding/JSeq.java b/src/jalview/binding/JSeq.java
index 68d545f..996a807 100644 (file)
--- a/src/jalview/binding/JSeq.java
+++ b/src/jalview/binding/JSeq.java
@@ -1,31 +1,16 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
  */
+
 package jalview.binding;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
 
-import jalview.util.MessageManager;
-
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -244,11 +229,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._featuresList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "getFeatures",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._featuresList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("getFeatures: Index value '"
+              + index + "' not in range [0.."
+              + (this._featuresList.size() - 1) + "]");
     }
 
     return (jalview.binding.Features) _featuresList.get(index);
@@ -303,11 +286,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._pdbidsList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "getPdbids",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._pdbidsList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException("getPdbids: Index value '"
+              + index + "' not in range [0.."
+              + (this._pdbidsList.size() - 1) + "]");
     }
 
     return (jalview.binding.Pdbids) _pdbidsList.get(index);
@@ -543,11 +524,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._featuresList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "setFeatures",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._featuresList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("setFeatures: Index value '"
+              + index + "' not in range [0.."
+              + (this._featuresList.size() - 1) + "]");
     }
 
     this._featuresList.set(index, vFeatures);
@@ -596,11 +575,9 @@ public class JSeq implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._pdbidsList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "setPdbids",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._pdbidsList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException("setPdbids: Index value '"
+              + index + "' not in range [0.."
+              + (this._pdbidsList.size() - 1) + "]");
     }
 
     this._pdbidsList.set(index, vPdbids);