JAL-1645 source formatting and organise imports

[jalview.git] / src / jalview / binding / JalviewModelSequence.java

diff --git a/src/jalview/binding/JalviewModelSequence.java b/src/jalview/binding/JalviewModelSequence.java
index 43fa983..eb0716d 100644 (file)
--- a/src/jalview/binding/JalviewModelSequence.java
+++ b/src/jalview/binding/JalviewModelSequence.java
@@ -1,31 +1,16 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
  */
+
 package jalview.binding;
 
 //---------------------------------/
 //- Imported classes and packages -/
 //---------------------------------/
 
-import jalview.util.MessageManager;
-
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
 
@@ -301,11 +286,9 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JGroupList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "getJGroup",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._JGroupList.size() - 1)).toString()
-        }));
+      throw new IndexOutOfBoundsException("getJGroup: Index value '"
+              + index + "' not in range [0.."
+              + (this._JGroupList.size() - 1) + "]");
     }
 
     return (jalview.binding.JGroup) _JGroupList.get(index);
@@ -350,11 +333,8 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JSeqList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "getJSeq",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._JSeqList.size() - 1)).toString()
-          }));
+      throw new IndexOutOfBoundsException("getJSeq: Index value '" + index
+              + "' not in range [0.." + (this._JSeqList.size() - 1) + "]");
     }
 
     return (jalview.binding.JSeq) _JSeqList.get(index);
@@ -399,11 +379,8 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "getJgetTreeSeq",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._treeList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("getTree: Index value '" + index
+              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
     }
 
     return (jalview.binding.Tree) _treeList.get(index);
@@ -448,11 +425,9 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._userColoursList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "getUserColours",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._userColoursList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException("getUserColours: Index value '"
+              + index + "' not in range [0.."
+              + (this._userColoursList.size() - 1) + "]");
     }
 
     return (jalview.binding.UserColours) _userColoursList.get(index);
@@ -498,11 +473,9 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._viewportList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "getViewport",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._viewportList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("getViewport: Index value '"
+              + index + "' not in range [0.."
+              + (this._viewportList.size() - 1) + "]");
     }
 
     return (jalview.binding.Viewport) _viewportList.get(index);
@@ -770,11 +743,9 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JGroupList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "setJGroup",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._JGroupList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException("setJGroup: Index value '"
+              + index + "' not in range [0.."
+              + (this._JGroupList.size() - 1) + "]");
     }
 
     this._JGroupList.set(index, vJGroup);
@@ -810,11 +781,8 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._JSeqList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "setJSeq",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._JSeqList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("setJSeq: Index value '" + index
+              + "' not in range [0.." + (this._JSeqList.size() - 1) + "]");
     }
 
     this._JSeqList.set(index, vJSeq);
@@ -850,11 +818,8 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._treeList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "setTree",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._treeList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException("setTree: Index value '" + index
+              + "' not in range [0.." + (this._treeList.size() - 1) + "]");
     }
 
     this._treeList.set(index, vTree);
@@ -891,11 +856,9 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._userColoursList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                 "setUserColours",
-                 Integer.valueOf(index).toString(),
-                 Integer.valueOf((this._userColoursList.size() - 1)).toString()
-        })); 
+      throw new IndexOutOfBoundsException("setUserColours: Index value '"
+              + index + "' not in range [0.."
+              + (this._userColoursList.size() - 1) + "]");
     }
 
     this._userColoursList.set(index, vUserColours);
@@ -933,11 +896,9 @@ public class JalviewModelSequence implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._viewportList.size())
     {
-        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
-                         "setViewport",
-                         Integer.valueOf(index).toString(),
-                         Integer.valueOf((this._viewportList.size() - 1)).toString()
-          })); 
+      throw new IndexOutOfBoundsException("setViewport: Index value '"
+              + index + "' not in range [0.."
+              + (this._viewportList.size() - 1) + "]");
     }
 
     this._viewportList.set(index, vViewport);