XML schema changes
[jalview.git] / src / jalview / binding / JalviewModelSequence2.java
diff --git a/src/jalview/binding/JalviewModelSequence2.java b/src/jalview/binding/JalviewModelSequence2.java
new file mode 100755 (executable)
index 0000000..36e5579
--- /dev/null
@@ -0,0 +1,274 @@
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package jalview.binding;\r
+\r
+  //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+import java.util.Enumeration;\r
+import java.util.Vector;\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+import org.xml.sax.ContentHandler;\r
+\r
+/**\r
+ * Class JalviewModelSequence2.\r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public class JalviewModelSequence2 implements java.io.Serializable {\r
+\r
+\r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     * Field _items\r
+     */\r
+    private java.util.Vector _items;\r
+\r
+\r
+      //----------------/\r
+     //- Constructors -/\r
+    //----------------/\r
+\r
+    public JalviewModelSequence2() {\r
+        super();\r
+        _items = new Vector();\r
+    } //-- jalview.binding.JalviewModelSequence2()\r
+\r
+\r
+      //-----------/\r
+     //- Methods -/\r
+    //-----------/\r
+\r
+    /**\r
+     * Method addJalviewModelSequence2Item\r
+     * \r
+     * \r
+     * \r
+     * @param vJalviewModelSequence2Item\r
+     */\r
+    public void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        _items.addElement(vJalviewModelSequence2Item);\r
+    } //-- void addJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) \r
+\r
+    /**\r
+     * Method addJalviewModelSequence2Item\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @param vJalviewModelSequence2Item\r
+     */\r
+    public void addJalviewModelSequence2Item(int index, jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        _items.insertElementAt(vJalviewModelSequence2Item, index);\r
+    } //-- void addJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) \r
+\r
+    /**\r
+     * Method enumerateJalviewModelSequence2Item\r
+     * \r
+     * \r
+     * \r
+     * @return Enumeration\r
+     */\r
+    public java.util.Enumeration enumerateJalviewModelSequence2Item()\r
+    {\r
+        return _items.elements();\r
+    } //-- java.util.Enumeration enumerateJalviewModelSequence2Item() \r
+\r
+    /**\r
+     * Method getJalviewModelSequence2Item\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @return JalviewModelSequence2Item\r
+     */\r
+    public jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int index)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        //-- check bounds for index\r
+        if ((index < 0) || (index > _items.size())) {\r
+            throw new IndexOutOfBoundsException();\r
+        }\r
+        \r
+        return (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);\r
+    } //-- jalview.binding.JalviewModelSequence2Item getJalviewModelSequence2Item(int) \r
+\r
+    /**\r
+     * Method getJalviewModelSequence2Item\r
+     * \r
+     * \r
+     * \r
+     * @return JalviewModelSequence2Item\r
+     */\r
+    public jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item()\r
+    {\r
+        int size = _items.size();\r
+        jalview.binding.JalviewModelSequence2Item[] mArray = new jalview.binding.JalviewModelSequence2Item[size];\r
+        for (int index = 0; index < size; index++) {\r
+            mArray[index] = (jalview.binding.JalviewModelSequence2Item) _items.elementAt(index);\r
+        }\r
+        return mArray;\r
+    } //-- jalview.binding.JalviewModelSequence2Item[] getJalviewModelSequence2Item() \r
+\r
+    /**\r
+     * Method getJalviewModelSequence2ItemCount\r
+     * \r
+     * \r
+     * \r
+     * @return int\r
+     */\r
+    public int getJalviewModelSequence2ItemCount()\r
+    {\r
+        return _items.size();\r
+    } //-- int getJalviewModelSequence2ItemCount() \r
+\r
+    /**\r
+     * Method isValid\r
+     * \r
+     * \r
+     * \r
+     * @return boolean\r
+     */\r
+    public boolean isValid()\r
+    {\r
+        try {\r
+            validate();\r
+        }\r
+        catch (org.exolab.castor.xml.ValidationException vex) {\r
+            return false;\r
+        }\r
+        return true;\r
+    } //-- boolean isValid() \r
+\r
+    /**\r
+     * Method marshal\r
+     * \r
+     * \r
+     * \r
+     * @param out\r
+     */\r
+    public void marshal(java.io.Writer out)\r
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        \r
+        Marshaller.marshal(this, out);\r
+    } //-- void marshal(java.io.Writer) \r
+\r
+    /**\r
+     * Method marshal\r
+     * \r
+     * \r
+     * \r
+     * @param handler\r
+     */\r
+    public void marshal(org.xml.sax.ContentHandler handler)\r
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        \r
+        Marshaller.marshal(this, handler);\r
+    } //-- void marshal(org.xml.sax.ContentHandler) \r
+\r
+    /**\r
+     * Method removeAllJalviewModelSequence2Item\r
+     * \r
+     */\r
+    public void removeAllJalviewModelSequence2Item()\r
+    {\r
+        _items.removeAllElements();\r
+    } //-- void removeAllJalviewModelSequence2Item() \r
+\r
+    /**\r
+     * Method removeJalviewModelSequence2Item\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @return JalviewModelSequence2Item\r
+     */\r
+    public jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int index)\r
+    {\r
+        java.lang.Object obj = _items.elementAt(index);\r
+        _items.removeElementAt(index);\r
+        return (jalview.binding.JalviewModelSequence2Item) obj;\r
+    } //-- jalview.binding.JalviewModelSequence2Item removeJalviewModelSequence2Item(int) \r
+\r
+    /**\r
+     * Method setJalviewModelSequence2Item\r
+     * \r
+     * \r
+     * \r
+     * @param index\r
+     * @param vJalviewModelSequence2Item\r
+     */\r
+    public void setJalviewModelSequence2Item(int index, jalview.binding.JalviewModelSequence2Item vJalviewModelSequence2Item)\r
+        throws java.lang.IndexOutOfBoundsException\r
+    {\r
+        //-- check bounds for index\r
+        if ((index < 0) || (index > _items.size())) {\r
+            throw new IndexOutOfBoundsException();\r
+        }\r
+        _items.setElementAt(vJalviewModelSequence2Item, index);\r
+    } //-- void setJalviewModelSequence2Item(int, jalview.binding.JalviewModelSequence2Item) \r
+\r
+    /**\r
+     * Method setJalviewModelSequence2Item\r
+     * \r
+     * \r
+     * \r
+     * @param jalviewModelSequence2ItemArray\r
+     */\r
+    public void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item[] jalviewModelSequence2ItemArray)\r
+    {\r
+        //-- copy array\r
+        _items.removeAllElements();\r
+        for (int i = 0; i < jalviewModelSequence2ItemArray.length; i++) {\r
+            _items.addElement(jalviewModelSequence2ItemArray[i]);\r
+        }\r
+    } //-- void setJalviewModelSequence2Item(jalview.binding.JalviewModelSequence2Item) \r
+\r
+    /**\r
+     * Method unmarshal\r
+     * \r
+     * \r
+     * \r
+     * @param reader\r
+     * @return Object\r
+     */\r
+    public static java.lang.Object unmarshal(java.io.Reader reader)\r
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        return (jalview.binding.JalviewModelSequence2) Unmarshaller.unmarshal(jalview.binding.JalviewModelSequence2.class, reader);\r
+    } //-- java.lang.Object unmarshal(java.io.Reader) \r
+\r
+    /**\r
+     * Method validate\r
+     * \r
+     */\r
+    public void validate()\r
+        throws org.exolab.castor.xml.ValidationException\r
+    {\r
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+        validator.validate(this);\r
+    } //-- void validate() \r
+\r
+}\r