JAL-1645 source formatting and organise imports

[jalview.git] / src / jalview / binding / Pdbentry.java

diff --git a/src/jalview/binding/Pdbentry.java b/src/jalview/binding/Pdbentry.java
old mode 100755 (executable)
new mode 100644 (file)
index 53a2484..6c0e745
--- a/src/jalview/binding/Pdbentry.java
+++ b/src/jalview/binding/Pdbentry.java
@@ -1,26 +1,15 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
  */
+
 package jalview.binding;
 
-// ---------------------------------/
-// - Imported classes and packages -/
-// ---------------------------------/
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
 
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
@@ -71,7 +60,7 @@ public class Pdbentry implements java.io.Serializable
    * 
    * @param vPdbentryItem
    * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
+   *           if the index given is outside the bounds of the collection
    */
   public void addPdbentryItem(
           final jalview.binding.PdbentryItem vPdbentryItem)
@@ -86,7 +75,7 @@ public class Pdbentry implements java.io.Serializable
    * @param index
    * @param vPdbentryItem
    * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
+   *           if the index given is outside the bounds of the collection
    */
   public void addPdbentryItem(final int index,
           final jalview.binding.PdbentryItem vPdbentryItem)
@@ -120,7 +109,7 @@ public class Pdbentry implements java.io.Serializable
    * 
    * @param index
    * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
+   *           if the index given is outside the bounds of the collection
    * @return the value of the jalview.binding.PdbentryItem at the given index
    */
   public jalview.binding.PdbentryItem getPdbentryItem(final int index)
@@ -194,11 +183,10 @@ public class Pdbentry implements java.io.Serializable
    * 
    * @param out
    * @throws org.exolab.castor.xml.MarshalException
-   *                 if object is null or if any SAXException is thrown during
-   *                 marshaling
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
    * @throws org.exolab.castor.xml.ValidationException
-   *                 if this object is an invalid instance according to the
-   *                 schema
+   *           if this object is an invalid instance according to the schema
    */
   public void marshal(final java.io.Writer out)
           throws org.exolab.castor.xml.MarshalException,
@@ -212,13 +200,12 @@ public class Pdbentry implements java.io.Serializable
    * 
    * @param handler
    * @throws java.io.IOException
-   *                 if an IOException occurs during marshaling
+   *           if an IOException occurs during marshaling
    * @throws org.exolab.castor.xml.ValidationException
-   *                 if this object is an invalid instance according to the
-   *                 schema
+   *           if this object is an invalid instance according to the schema
    * @throws org.exolab.castor.xml.MarshalException
-   *                 if object is null or if any SAXException is thrown during
-   *                 marshaling
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
    */
   public void marshal(final org.xml.sax.ContentHandler handler)
           throws java.io.IOException,
@@ -229,7 +216,7 @@ public class Pdbentry implements java.io.Serializable
   }
 
   /**
-   */
+     */
   public void removeAllPdbentryItem()
   {
     this._items.clear();
@@ -264,7 +251,7 @@ public class Pdbentry implements java.io.Serializable
    * Sets the value of field 'id'.
    * 
    * @param id
-   *                the value of field 'id'.
+   *          the value of field 'id'.
    */
   public void setId(final java.lang.String id)
   {
@@ -277,7 +264,7 @@ public class Pdbentry implements java.io.Serializable
    * @param index
    * @param vPdbentryItem
    * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
+   *           if the index given is outside the bounds of the collection
    */
   public void setPdbentryItem(final int index,
           final jalview.binding.PdbentryItem vPdbentryItem)
@@ -315,7 +302,7 @@ public class Pdbentry implements java.io.Serializable
    * Sets the value of field 'type'.
    * 
    * @param type
-   *                the value of field 'type'.
+   *          the value of field 'type'.
    */
   public void setType(final java.lang.String type)
   {
@@ -327,11 +314,10 @@ public class Pdbentry implements java.io.Serializable
    * 
    * @param reader
    * @throws org.exolab.castor.xml.MarshalException
-   *                 if object is null or if any SAXException is thrown during
-   *                 marshaling
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
    * @throws org.exolab.castor.xml.ValidationException
-   *                 if this object is an invalid instance according to the
-   *                 schema
+   *           if this object is an invalid instance according to the schema
    * @return the unmarshaled jalview.binding.Pdbentry
    */
   public static jalview.binding.Pdbentry unmarshal(
@@ -347,8 +333,7 @@ public class Pdbentry implements java.io.Serializable
    * 
    * 
    * @throws org.exolab.castor.xml.ValidationException
-   *                 if this object is an invalid instance according to the
-   *                 schema
+   *           if this object is an invalid instance according to the schema
    */
   public void validate() throws org.exolab.castor.xml.ValidationException
   {