JAL-1620 version bump and release notes

[jalview.git] / src / jalview / binding / PdbentryItem.java

diff --git a/src/jalview/binding/PdbentryItem.java b/src/jalview/binding/PdbentryItem.java
old mode 100755 (executable)
new mode 100644 (file)
index dc2314b..5eb9c69
--- a/src/jalview/binding/PdbentryItem.java
+++ b/src/jalview/binding/PdbentryItem.java
@@ -1,23 +1,27 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
  * 
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.binding;
 
+import jalview.util.MessageManager;
+
 /**
  * Class PdbentryItem.
  * 
@@ -54,7 +58,7 @@ public class PdbentryItem implements java.io.Serializable
    * 
    * @param vProperty
    * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
+   *           if the index given is outside the bounds of the collection
    */
   public void addProperty(final jalview.binding.Property vProperty)
           throws java.lang.IndexOutOfBoundsException
@@ -68,7 +72,7 @@ public class PdbentryItem implements java.io.Serializable
    * @param index
    * @param vProperty
    * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
+   *           if the index given is outside the bounds of the collection
    */
   public void addProperty(final int index,
           final jalview.binding.Property vProperty)
@@ -92,7 +96,7 @@ public class PdbentryItem implements java.io.Serializable
    * 
    * @param index
    * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
+   *           if the index given is outside the bounds of the collection
    * @return the value of the jalview.binding.Property at the given index
    */
   public jalview.binding.Property getProperty(final int index)
@@ -101,9 +105,11 @@ public class PdbentryItem implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._propertyList.size())
     {
-      throw new IndexOutOfBoundsException("getProperty: Index value '"
-              + index + "' not in range [0.."
-              + (this._propertyList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                 "getProperty",
+                 Integer.valueOf(index).toString(),
+                 Integer.valueOf((this._propertyList.size() - 1)).toString()
+        })); 
     }
 
     return (jalview.binding.Property) _propertyList.get(index);
@@ -135,7 +141,7 @@ public class PdbentryItem implements java.io.Serializable
   }
 
   /**
-   */
+     */
   public void removeAllProperty()
   {
     this._propertyList.clear();
@@ -171,7 +177,7 @@ public class PdbentryItem implements java.io.Serializable
    * @param index
    * @param vProperty
    * @throws java.lang.IndexOutOfBoundsException
-   *                 if the index given is outside the bounds of the collection
+   *           if the index given is outside the bounds of the collection
    */
   public void setProperty(final int index,
           final jalview.binding.Property vProperty)
@@ -180,9 +186,11 @@ public class PdbentryItem implements java.io.Serializable
     // check bounds for index
     if (index < 0 || index >= this._propertyList.size())
     {
-      throw new IndexOutOfBoundsException("setProperty: Index value '"
-              + index + "' not in range [0.."
-              + (this._propertyList.size() - 1) + "]");
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+                         "setProperty",
+                         Integer.valueOf(index).toString(),
+                         Integer.valueOf((this._propertyList.size() - 1)).toString()
+          })); 
     }
 
     this._propertyList.set(index, vProperty);