Formatted source

[jalview.git] / src / jalview / binding / SequenceType.java

diff --git a/src/jalview/binding/SequenceType.java b/src/jalview/binding/SequenceType.java
index bf560bb..6060e77 100755 (executable)
--- a/src/jalview/binding/SequenceType.java
+++ b/src/jalview/binding/SequenceType.java
@@ -4,7 +4,6 @@
  * Schema.\r
  * $Id$\r
  */\r
-\r
 /*\r
 * Jalview - A Sequence Alignment Editor and Viewer\r
 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
@@ -23,33 +22,32 @@
 * along with this program; if not, write to the Free Software\r
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
-\r
 package jalview.binding;\r
 \r
-  //---------------------------------/\r
- //- Imported classes and packages -/\r
-//---------------------------------/\r
-\r
-import java.io.IOException;\r
-import java.io.Reader;\r
-import java.io.Serializable;\r
-import java.io.Writer;\r
 import org.exolab.castor.xml.MarshalException;\r
 import org.exolab.castor.xml.Marshaller;\r
 import org.exolab.castor.xml.Unmarshaller;\r
 import org.exolab.castor.xml.ValidationException;\r
+\r
 import org.xml.sax.ContentHandler;\r
 \r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
+//---------------------------------/\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+\r
+\r
 /**\r
  * Class SequenceType.\r
  *\r
  * @version $Revision$ $Date$\r
  */\r
 public class SequenceType implements java.io.Serializable {\r
-\r
-\r
-      //--------------------------/\r
-     //- Class/Member Variables -/\r
+    //--------------------------/\r
+    //- Class/Member Variables -/\r
     //--------------------------/\r
 \r
     /**\r
@@ -67,30 +65,19 @@ public class SequenceType implements java.io.Serializable {
      */\r
     private java.lang.String _name;\r
 \r
-\r
-      //----------------/\r
-     //- Constructors -/\r
     //----------------/\r
-\r
+    //- Constructors -/\r
+    //----------------/\r
     public SequenceType() {\r
         super();\r
-    } //-- jalview.binding.SequenceType()\r
-\r
+    }\r
+     //-- jalview.binding.SequenceType()\r
+ //-----------/\r
 \r
-      //-----------/\r
-     //- Methods -/\r
-    //-----------/\r
-\r
-    /**\r
-     * Returns the value of field 'id'.\r
-     *\r
-     * @return String\r
-     * @return the value of field 'id'.\r
-     */\r
-    public java.lang.String getId()\r
-    {\r
+    public java.lang.String getId() {\r
         return this._id;\r
-    } //-- java.lang.String getId()\r
+    }\r
+     //-- java.lang.String getId()\r
 \r
     /**\r
      * Returns the value of field 'name'.\r
@@ -98,10 +85,10 @@ public class SequenceType implements java.io.Serializable {
      * @return String\r
      * @return the value of field 'name'.\r
      */\r
-    public java.lang.String getName()\r
-    {\r
+    public java.lang.String getName() {\r
         return this._name;\r
-    } //-- java.lang.String getName()\r
+    }\r
+     //-- java.lang.String getName()\r
 \r
     /**\r
      * Returns the value of field 'sequence'.\r
@@ -109,10 +96,10 @@ public class SequenceType implements java.io.Serializable {
      * @return String\r
      * @return the value of field 'sequence'.\r
      */\r
-    public java.lang.String getSequence()\r
-    {\r
+    public java.lang.String getSequence() {\r
         return this._sequence;\r
-    } //-- java.lang.String getSequence()\r
+    }\r
+     //-- java.lang.String getSequence()\r
 \r
     /**\r
      * Method isValid\r
@@ -121,16 +108,16 @@ public class SequenceType implements java.io.Serializable {
      *\r
      * @return boolean\r
      */\r
-    public boolean isValid()\r
-    {\r
+    public boolean isValid() {\r
         try {\r
             validate();\r
-        }\r
-        catch (org.exolab.castor.xml.ValidationException vex) {\r
+        } catch (org.exolab.castor.xml.ValidationException vex) {\r
             return false;\r
         }\r
+\r
         return true;\r
-    } //-- boolean isValid()\r
+    }\r
+     //-- boolean isValid()\r
 \r
     /**\r
      * Method marshal\r
@@ -140,11 +127,11 @@ public class SequenceType implements java.io.Serializable {
      * @param out\r
      */\r
     public void marshal(java.io.Writer out)\r
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
-\r
+        throws org.exolab.castor.xml.MarshalException, \r
+            org.exolab.castor.xml.ValidationException {\r
         Marshaller.marshal(this, out);\r
-    } //-- void marshal(java.io.Writer)\r
+    }\r
+     //-- void marshal(java.io.Writer)\r
 \r
     /**\r
      * Method marshal\r
@@ -154,41 +141,41 @@ public class SequenceType implements java.io.Serializable {
      * @param handler\r
      */\r
     public void marshal(org.xml.sax.ContentHandler handler)\r
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
-\r
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, \r
+            org.exolab.castor.xml.ValidationException {\r
         Marshaller.marshal(this, handler);\r
-    } //-- void marshal(org.xml.sax.ContentHandler)\r
+    }\r
+     //-- void marshal(org.xml.sax.ContentHandler)\r
 \r
     /**\r
      * Sets the value of field 'id'.\r
      *\r
      * @param id the value of field 'id'.\r
      */\r
-    public void setId(java.lang.String id)\r
-    {\r
+    public void setId(java.lang.String id) {\r
         this._id = id;\r
-    } //-- void setId(java.lang.String)\r
+    }\r
+     //-- void setId(java.lang.String)\r
 \r
     /**\r
      * Sets the value of field 'name'.\r
      *\r
      * @param name the value of field 'name'.\r
      */\r
-    public void setName(java.lang.String name)\r
-    {\r
+    public void setName(java.lang.String name) {\r
         this._name = name;\r
-    } //-- void setName(java.lang.String)\r
+    }\r
+     //-- void setName(java.lang.String)\r
 \r
     /**\r
      * Sets the value of field 'sequence'.\r
      *\r
      * @param sequence the value of field 'sequence'.\r
      */\r
-    public void setSequence(java.lang.String sequence)\r
-    {\r
+    public void setSequence(java.lang.String sequence) {\r
         this._sequence = sequence;\r
-    } //-- void setSequence(java.lang.String)\r
+    }\r
+     //-- void setSequence(java.lang.String)\r
 \r
     /**\r
      * Method unmarshal\r
@@ -199,20 +186,20 @@ public class SequenceType implements java.io.Serializable {
      * @return Object\r
      */\r
     public static java.lang.Object unmarshal(java.io.Reader reader)\r
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
-    {\r
-        return (jalview.binding.SequenceType) Unmarshaller.unmarshal(jalview.binding.SequenceType.class, reader);\r
-    } //-- java.lang.Object unmarshal(java.io.Reader)\r
+        throws org.exolab.castor.xml.MarshalException, \r
+            org.exolab.castor.xml.ValidationException {\r
+        return (jalview.binding.SequenceType) Unmarshaller.unmarshal(jalview.binding.SequenceType.class,\r
+            reader);\r
+    }\r
+     //-- java.lang.Object unmarshal(java.io.Reader)\r
 \r
     /**\r
      * Method validate\r
      *\r
      */\r
-    public void validate()\r
-        throws org.exolab.castor.xml.ValidationException\r
-    {\r
+    public void validate() throws org.exolab.castor.xml.ValidationException {\r
         org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
         validator.validate(this);\r
-    } //-- void validate()\r
-\r
+    }\r
+     //-- void validate()\r
 }\r