/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.binding;
-// ---------------------------------/
-// - Imported classes and packages -/
-// ---------------------------------/
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
// -----------/
/**
- */
+ */
public void deleteConsThreshold()
{
this._has_consThreshold = false;
}
/**
- */
+ */
public void deleteConservationSelected()
{
this._has_conservationSelected = false;
}
/**
- */
+ */
public void deleteFontSize()
{
this._has_fontSize = false;
}
/**
- */
+ */
public void deleteFontStyle()
{
this._has_fontStyle = false;
}
/**
- */
+ */
public void deleteHeight()
{
this._has_height = false;
}
/**
- */
+ */
public void deletePidSelected()
{
this._has_pidSelected = false;
}
/**
- */
+ */
public void deletePidThreshold()
{
this._has_pidThreshold = false;
}
/**
- */
+ */
public void deleteRenderGaps()
{
this._has_renderGaps = false;
}
/**
- */
+ */
public void deleteShowAnnotation()
{
this._has_showAnnotation = false;
}
/**
- */
+ */
public void deleteShowBoxes()
{
this._has_showBoxes = false;
}
/**
- */
+ */
public void deleteShowColourText()
{
this._has_showColourText = false;
}
/**
- */
+ */
public void deleteShowConservation()
{
this._has_showConservation = false;
}
/**
- */
+ */
public void deleteShowFullId()
{
this._has_showFullId = false;
}
/**
- */
+ */
public void deleteShowIdentity()
{
this._has_showIdentity = false;
}
/**
- */
+ */
public void deleteShowQuality()
{
this._has_showQuality = false;
}
/**
- */
+ */
public void deleteShowSequenceFeatures()
{
this._has_showSequenceFeatures = false;
}
/**
- */
+ */
public void deleteShowText()
{
this._has_showText = false;
}
/**
- */
+ */
public void deleteStartRes()
{
this._has_startRes = false;
}
/**
- */
+ */
public void deleteStartSeq()
{
this._has_startSeq = false;
}
/**
- */
+ */
public void deleteWidth()
{
this._has_width = false;
}
/**
- */
+ */
public void deleteWrapAlignment()
{
this._has_wrapAlignment = false;
}
/**
- */
+ */
public void deleteXpos()
{
this._has_xpos = false;
}
/**
- */
+ */
public void deleteYpos()
{
this._has_ypos = false;
*
* @param out
* @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
+ * if object is null or if any SAXException is thrown during
+ * marshaling
* @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the
- * schema
+ * if this object is an invalid instance according to the schema
*/
public void marshal(final java.io.Writer out)
throws org.exolab.castor.xml.MarshalException,
*
* @param handler
* @throws java.io.IOException
- * if an IOException occurs during marshaling
+ * if an IOException occurs during marshaling
* @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the
- * schema
+ * if this object is an invalid instance according to the schema
* @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
+ * if object is null or if any SAXException is thrown during
+ * marshaling
*/
public void marshal(final org.xml.sax.ContentHandler handler)
throws java.io.IOException,
* Sets the value of field 'bgColour'.
*
* @param bgColour
- * the value of field 'bgColour'.
+ * the value of field 'bgColour'.
*/
public void setBgColour(final java.lang.String bgColour)
{
* Sets the value of field 'consThreshold'.
*
* @param consThreshold
- * the value of field 'consThreshold'.
+ * the value of field 'consThreshold'.
*/
public void setConsThreshold(final int consThreshold)
{
* Sets the value of field 'conservationSelected'.
*
* @param conservationSelected
- * the value of field 'conservationSelected'.
+ * the value of field 'conservationSelected'.
*/
public void setConservationSelected(final boolean conservationSelected)
{
* Sets the value of field 'fontName'.
*
* @param fontName
- * the value of field 'fontName'.
+ * the value of field 'fontName'.
*/
public void setFontName(final java.lang.String fontName)
{
* Sets the value of field 'fontSize'.
*
* @param fontSize
- * the value of field 'fontSize'.
+ * the value of field 'fontSize'.
*/
public void setFontSize(final int fontSize)
{
* Sets the value of field 'fontStyle'.
*
* @param fontStyle
- * the value of field 'fontStyle'.
+ * the value of field 'fontStyle'.
*/
public void setFontStyle(final int fontStyle)
{
* Sets the value of field 'height'.
*
* @param height
- * the value of field 'height'.
+ * the value of field 'height'.
*/
public void setHeight(final int height)
{
* Sets the value of field 'pidSelected'.
*
* @param pidSelected
- * the value of field 'pidSelected'.
+ * the value of field 'pidSelected'.
*/
public void setPidSelected(final boolean pidSelected)
{
* Sets the value of field 'pidThreshold'.
*
* @param pidThreshold
- * the value of field 'pidThreshold'.
+ * the value of field 'pidThreshold'.
*/
public void setPidThreshold(final int pidThreshold)
{
* Sets the value of field 'renderGaps'.
*
* @param renderGaps
- * the value of field 'renderGaps'.
+ * the value of field 'renderGaps'.
*/
public void setRenderGaps(final boolean renderGaps)
{
* Sets the value of field 'showAnnotation'.
*
* @param showAnnotation
- * the value of field 'showAnnotation'.
+ * the value of field 'showAnnotation'.
*/
public void setShowAnnotation(final boolean showAnnotation)
{
* Sets the value of field 'showBoxes'.
*
* @param showBoxes
- * the value of field 'showBoxes'.
+ * the value of field 'showBoxes'.
*/
public void setShowBoxes(final boolean showBoxes)
{
* Sets the value of field 'showColourText'.
*
* @param showColourText
- * the value of field 'showColourText'.
+ * the value of field 'showColourText'.
*/
public void setShowColourText(final boolean showColourText)
{
* Sets the value of field 'showConservation'.
*
* @param showConservation
- * the value of field 'showConservation'
+ * the value of field 'showConservation'
*/
public void setShowConservation(final boolean showConservation)
{
* Sets the value of field 'showFullId'.
*
* @param showFullId
- * the value of field 'showFullId'.
+ * the value of field 'showFullId'.
*/
public void setShowFullId(final boolean showFullId)
{
* Sets the value of field 'showIdentity'.
*
* @param showIdentity
- * the value of field 'showIdentity'.
+ * the value of field 'showIdentity'.
*/
public void setShowIdentity(final boolean showIdentity)
{
* Sets the value of field 'showQuality'.
*
* @param showQuality
- * the value of field 'showQuality'.
+ * the value of field 'showQuality'.
*/
public void setShowQuality(final boolean showQuality)
{
* Sets the value of field 'showSequenceFeatures'.
*
* @param showSequenceFeatures
- * the value of field 'showSequenceFeatures'.
+ * the value of field 'showSequenceFeatures'.
*/
public void setShowSequenceFeatures(final boolean showSequenceFeatures)
{
* Sets the value of field 'showText'.
*
* @param showText
- * the value of field 'showText'.
+ * the value of field 'showText'.
*/
public void setShowText(final boolean showText)
{
* Sets the value of field 'startRes'.
*
* @param startRes
- * the value of field 'startRes'.
+ * the value of field 'startRes'.
*/
public void setStartRes(final int startRes)
{
* Sets the value of field 'startSeq'.
*
* @param startSeq
- * the value of field 'startSeq'.
+ * the value of field 'startSeq'.
*/
public void setStartSeq(final int startSeq)
{
* Sets the value of field 'title'.
*
* @param title
- * the value of field 'title'.
+ * the value of field 'title'.
*/
public void setTitle(final java.lang.String title)
{
* Sets the value of field 'width'.
*
* @param width
- * the value of field 'width'.
+ * the value of field 'width'.
*/
public void setWidth(final int width)
{
* Sets the value of field 'wrapAlignment'.
*
* @param wrapAlignment
- * the value of field 'wrapAlignment'.
+ * the value of field 'wrapAlignment'.
*/
public void setWrapAlignment(final boolean wrapAlignment)
{
* Sets the value of field 'xpos'.
*
* @param xpos
- * the value of field 'xpos'.
+ * the value of field 'xpos'.
*/
public void setXpos(final int xpos)
{
* Sets the value of field 'ypos'.
*
* @param ypos
- * the value of field 'ypos'.
+ * the value of field 'ypos'.
*/
public void setYpos(final int ypos)
{
*
* @param reader
* @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
+ * if object is null or if any SAXException is thrown during
+ * marshaling
* @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the
- * schema
+ * if this object is an invalid instance according to the schema
* @return the unmarshaled jalview.binding.Viewport
*/
public static jalview.binding.Viewport unmarshal(
*
*
* @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the
- * schema
+ * if this object is an invalid instance according to the schema
*/
public void validate() throws org.exolab.castor.xml.ValidationException
{
git://source.jalview.org / jalview.git / blobdiff