if (changed)
{
viewport.setColumnSelection(cs);
- alignPanel.paintAlignment(true);
+ alignPanel.paintAlignment(false, false);
int columnCount = invert
? (sqcol.getEndRes() - sqcol.getStartRes() + 1)
- bs.cardinality()
if (!extendCurrent)
{
cs.clear();
- alignPanel.paintAlignment(true);
+ alignPanel.paintAlignment(false, false);
}
}
return false;
AlignmentSorter.sortByFeature(typ, gps, start, stop, al, method);
avcg.addHistoryItem(new OrderCommand(methodText, oldOrder,
viewport.getAlignment()));
- alignPanel.paintAlignment(true);
+ alignPanel.paintAlignment(true, false);
}
{
avcg.getFeatureSettingsUI().discoverAllFeatureData();
}
- alignPanel.paintAlignment(true);
+ alignPanel.paintAlignment(true, true);
}
return featuresFile;
if (changed)
{
viewport.setColumnSelection(cs);
- alignPanel.paintAlignment(true);
+ alignPanel.paintAlignment(false, false);
int columnCount = invert
? (sqcol.getEndRes() - sqcol.getStartRes() + 1)
- bs.cardinality()
if (!extendCurrent)
{
cs.clear();
- alignPanel.paintAlignment(true);
+ alignPanel.paintAlignment(false, false);
}
}
return false;