Merge branch 'develop' into features/JAL-1705_ensembl

[jalview.git] / src / jalview / datamodel / AlignmentExportData.java

diff --git a/src/jalview/datamodel/AlignmentExportData.java b/src/jalview/datamodel/AlignmentExportData.java
new file mode 100644 (file)
index 0000000..2393fe7
--- /dev/null
+++ b/src/jalview/datamodel/AlignmentExportData.java
@@ -0,0 +1,83 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.datamodel;
+
+import jalview.api.AlignExportSettingI;
+
+public class AlignmentExportData
+{
+  private AlignmentI alignment;
+
+  private String[] omitHidden;
+
+  private int[] startEnd;
+
+  private AlignExportSettingI settings;
+
+  public AlignmentExportData(AlignmentI align, String[] ommit,
+          int[] startEnd, AlignExportSettingI settings)
+  {
+    this.alignment = align;
+    this.omitHidden = ommit;
+    this.startEnd = startEnd;
+    this.settings = settings;
+  }
+
+  public AlignmentI getAlignment()
+  {
+    return alignment;
+  }
+
+  public void setAlignment(AlignmentI alignment)
+  {
+    this.alignment = alignment;
+  }
+
+  public String[] getOmitHidden()
+  {
+    return omitHidden;
+  }
+
+  public void setOmitHidden(String[] omitHidden)
+  {
+    this.omitHidden = omitHidden;
+  }
+
+  public int[] getStartEndPostions()
+  {
+    return startEnd;
+  }
+
+  public void setStartEndPostions(int[] startEnd)
+  {
+    this.startEnd = startEnd;
+  }
+
+  public AlignExportSettingI getSettings()
+  {
+    return settings;
+  }
+
+  public void setSettings(AlignExportSettingI settings)
+  {
+    this.settings = settings;
+  }
+}