/*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
-*/\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ */\r
package jalview.datamodel;\r
\r
import java.awt.*;\r
\r
-\r
/**\r
* DOCUMENT ME!\r
*\r
*/\r
public class Annotation\r
{\r
- /** DOCUMENT ME!! */\r
- public String displayCharacter = "";\r
+ /** DOCUMENT ME!! */\r
+ public String displayCharacter = "";\r
\r
- /** DOCUMENT ME!! */\r
- public String description = ""; // currently used as mouse over\r
+ /** DOCUMENT ME!! */\r
+ public String description = ""; // currently used as mouse over\r
\r
- /** DOCUMENT ME!! */\r
- public char secondaryStructure = ' '; // recognises H and E\r
+ /** DOCUMENT ME!! */\r
+ public char secondaryStructure = ' '; // recognises H and E\r
\r
- /** DOCUMENT ME!! */\r
- public float value;\r
+ /** DOCUMENT ME!! */\r
+ public float value;\r
\r
- // add visual cues here\r
+ // add visual cues here\r
\r
- /** DOCUMENT ME!! */\r
- public Color colour = Color.black;\r
+ /** DOCUMENT ME!! */\r
+ public Color colour = Color.black;\r
\r
- /**\r
- * Creates a new Annotation object.\r
- *\r
- * @param displayChar DOCUMENT ME!\r
- * @param desc DOCUMENT ME!\r
- * @param ss DOCUMENT ME!\r
- * @param val DOCUMENT ME!\r
- */\r
- public Annotation(String displayChar, String desc, char ss, float val)\r
- {\r
- displayCharacter = displayChar;\r
- description = desc;\r
- secondaryStructure = ss;\r
- value = val;\r
- }\r
+ /**\r
+ * Creates a new Annotation object.\r
+ *\r
+ * @param displayChar DOCUMENT ME!\r
+ * @param desc DOCUMENT ME!\r
+ * @param ss DOCUMENT ME!\r
+ * @param val DOCUMENT ME!\r
+ */\r
+ public Annotation(String displayChar, String desc, char ss, float val)\r
+ {\r
+ displayCharacter = displayChar;\r
+ description = desc;\r
+ secondaryStructure = ss;\r
+ value = val;\r
+ }\r
\r
- /**\r
- * Creates a new Annotation object.\r
- *\r
- * @param displayChar DOCUMENT ME!\r
- * @param desc DOCUMENT ME!\r
- * @param ss DOCUMENT ME!\r
- * @param val DOCUMENT ME!\r
- * @param colour DOCUMENT ME!\r
- */\r
- public Annotation(String displayChar, String desc, char ss, float val,\r
- Color colour)\r
- {\r
- this(displayChar, desc, ss, val);\r
- this.colour = colour;\r
- }\r
+ /**\r
+ * Creates a new Annotation object.\r
+ *\r
+ * @param displayChar DOCUMENT ME!\r
+ * @param desc DOCUMENT ME!\r
+ * @param ss DOCUMENT ME!\r
+ * @param val DOCUMENT ME!\r
+ * @param colour DOCUMENT ME!\r
+ */\r
+ public Annotation(String displayChar, String desc, char ss, float val,\r
+ Color colour)\r
+ {\r
+ this(displayChar, desc, ss, val);\r
+ this.colour = colour;\r
+ }\r
}\r