Formatting

[jalview.git] / src / jalview / datamodel / Annotation.java

diff --git a/src/jalview/datamodel/Annotation.java b/src/jalview/datamodel/Annotation.java
index 6179cfa..e0c49c8 100755 (executable)
--- a/src/jalview/datamodel/Annotation.java
+++ b/src/jalview/datamodel/Annotation.java
@@ -1,21 +1,79 @@
-package jalview.datamodel;
-import java.awt.*;
-
-public class Annotation
-{
-  public String displayCharacter="";
-  public String description="";       // currently used as mouse over
-  public char secondaryStructure=' '; // recognises H and E
-  public float value;
-
-  // add visual cues here
-  public Color colour = Color.black;
-
-  public Annotation(String displayChar, String desc, char ss, float val)
-  {
-    displayCharacter = displayChar;
-    description = desc;
-    secondaryStructure = ss;
-    value = val;
-  }
-}
+/*\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ */\r
+package jalview.datamodel;\r
+\r
+import java.awt.*;\r
+\r
+/**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @author $author$\r
+ * @version $Revision$\r
+ */\r
+public class Annotation\r
+{\r
+  /** DOCUMENT ME!! */\r
+  public String displayCharacter = "";\r
+\r
+  /** DOCUMENT ME!! */\r
+  public String description = ""; // currently used as mouse over\r
+\r
+  /** DOCUMENT ME!! */\r
+  public char secondaryStructure = ' '; // recognises H and E\r
+\r
+  /** DOCUMENT ME!! */\r
+  public float value;\r
+\r
+  // add visual cues here\r
+\r
+  /** DOCUMENT ME!! */\r
+  public Color colour = Color.black;\r
+\r
+  /**\r
+   * Creates a new Annotation object.\r
+   *\r
+   * @param displayChar DOCUMENT ME!\r
+   * @param desc DOCUMENT ME!\r
+   * @param ss DOCUMENT ME!\r
+   * @param val DOCUMENT ME!\r
+   */\r
+  public Annotation(String displayChar, String desc, char ss, float val)\r
+  {\r
+    displayCharacter = displayChar;\r
+    description = desc;\r
+    secondaryStructure = ss;\r
+    value = val;\r
+  }\r
+\r
+  /**\r
+   * Creates a new Annotation object.\r
+   *\r
+   * @param displayChar DOCUMENT ME!\r
+   * @param desc DOCUMENT ME!\r
+   * @param ss DOCUMENT ME!\r
+   * @param val DOCUMENT ME!\r
+   * @param colour DOCUMENT ME!\r
+   */\r
+  public Annotation(String displayChar, String desc, char ss, float val,\r
+                    Color colour)\r
+  {\r
+    this(displayChar, desc, ss, val);\r
+    this.colour = colour;\r
+  }\r
+}\r