JAL-1632 JAL-2416 load score matrices from file, as float[][]

[jalview.git] / src / jalview / datamodel / BinarySequence.java

diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java
index ed57dce..90b8be7 100755 (executable)
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -20,8 +20,8 @@
  */
 package jalview.datamodel;
 
+import jalview.analysis.scoremodels.ScoreMatrix;
 import jalview.schemes.ResidueProperties;
-import jalview.schemes.ScoreMatrix;
 
 /**
  * Encode a sequence as a numeric vector using either classic residue binary
@@ -132,7 +132,7 @@ public class BinarySequence extends Sequence
             : ResidueProperties.aaIndex, matrix.getMatrix());
   }
 
-  private void matrixEncode(final int[] aaIndex, final int[][] matrix)
+  private void matrixEncode(final int[] aaIndex, final float[][] matrix)
   {
     // Set all matrix to 0
     // dbinary = new double[getSequence().length * 21];