JAL-2388 Hidden cols separated from column selection (almost complete)

[jalview.git] / src / jalview / datamodel / CigarArray.java

diff --git a/src/jalview/datamodel/CigarArray.java b/src/jalview/datamodel/CigarArray.java
index f6e5862..a48a178 100644 (file)
--- a/src/jalview/datamodel/CigarArray.java
+++ b/src/jalview/datamodel/CigarArray.java
@@ -20,6 +20,8 @@
  */
 package jalview.datamodel;
 
+import htsjdk.samtools.Cigar;
+
 import java.util.List;
 
 public class CigarArray extends CigarBase
@@ -85,12 +87,12 @@ public class CigarArray extends CigarBase
    * @param columnSelection
    * @param selectionGroup
    */
-  public CigarArray(AlignmentI alignment, ColumnSelection columnSelection,
+  public CigarArray(AlignmentI alignment, HiddenColumns hidden,
           SequenceGroup selectionGroup)
   {
     this(constructSeqCigarArray(alignment, selectionGroup));
     constructFromAlignment(alignment,
-            columnSelection != null ? columnSelection.getHiddenColumns()
+            hidden != null ? hidden.getListOfCols()
                     : null, selectionGroup);
   }