JAL-1355

[jalview.git] / src / jalview / datamodel / CigarBase.java

diff --git a/src/jalview/datamodel/CigarBase.java b/src/jalview/datamodel/CigarBase.java
index 69826b6..d0ead87 100644 (file)
--- a/src/jalview/datamodel/CigarBase.java
+++ b/src/jalview/datamodel/CigarBase.java
@@ -20,6 +20,8 @@
  */
 package jalview.datamodel;
 
+import jalview.util.MessageManager;
+
 import java.util.*;
 
 public abstract class CigarBase
@@ -144,7 +146,7 @@ public abstract class CigarBase
         endpos = alcursor;
         break;
       default:
-        throw new Error("Unknown SeqCigar operation '" + operation[i] + "'");
+        throw new Error(MessageManager.formatMessage("error.unknown_seq_cigar_operation", new String[]{new StringBuffer(operation[i]).toString()}));
       }
     }
     if (++delcount > 0)
@@ -223,7 +225,7 @@ public abstract class CigarBase
       } while (c >= '0' && c <= '9' && j < l);
       if (j >= l && c >= '0' && c <= '9')
       {
-        throw new Exception("Unterminated cigar string.");
+        throw new Exception(MessageManager.getString("exception.unterminated_cigar_string"));
       }
       try
       {
@@ -232,7 +234,7 @@ public abstract class CigarBase
         i = j;
       } catch (Exception e)
       {
-        throw new Error("Implementation bug in parseCigarString");
+        throw new Error(MessageManager.getString("error.implementation_bug_parse_cigar_string"));
       }
       if (c >= 'a' && c <= 'z')
       {
@@ -244,9 +246,11 @@ public abstract class CigarBase
       }
       else
       {
-        throw new Exception("Unexpected operation '" + c
-                + "' in cigar string (position " + i + " in '"
-                + cigarString + "'");
+        throw new Exception(MessageManager.formatMessage("exception.unexpected_operation_cigar_string_pos", new String[]{
+                       new StringBuffer(c).toString(),
+                       Integer.valueOf(i).toString(),
+                       cigarString
+        }));
       }
     }
     return new Object[]
@@ -269,7 +273,7 @@ public abstract class CigarBase
     }
     if (op != M && op != D && op != I)
     {
-      throw new Error("Implementation error. Invalid operation string.");
+      throw new Error(MessageManager.getString("error.implementation_error_invalid_operation_string"));
     }
     if (range == 0)
     {
@@ -277,8 +281,7 @@ public abstract class CigarBase
     }
     if (range < 0)
     {
-      throw new Error(
-              "Invalid range string (must be zero or positive number)");
+      throw new Error(MessageManager.getString("error.invalid_range_string"));
     }
     int lngth = 0;
     if (operation == null)
@@ -390,8 +393,7 @@ public abstract class CigarBase
     }
     if (start < 0 || start > end)
     {
-      throw new Error(
-              "Implementation Error: deleteRange out of bounds: start must be non-negative and less than end.");
+      throw new Error(MessageManager.getString("error.implementation_error_delete_range_out_of_bounds"));
     }
     // find beginning
     int cursor = 0; // mark the position for the current operation being edited.
@@ -463,10 +465,9 @@ public abstract class CigarBase
           }
           break;
         case D:
-          throw new Error("Implementation error."); // do nothing;
+          throw new Error(MessageManager.getString("error.implementation_error")); // do nothing;
         default:
-          throw new Error("Implementation Error! Unknown operation '"
-                  + oldops[o] + "'");
+          throw new Error(MessageManager.formatMessage("error.implementation_error_unknown_operation", new String[]{new StringBuffer(oldops[o]).toString()}));
         }
         rlength -= remain;
         remain = oldrange[++o]; // number of op characters left to edit