int getWidth();
int getHeight();
+ public GroupSetI getGroupSet();
+
+ /// proxy methods to simplify use of the interface
+ /// Mappable contact matrices can override these to perform mapping
+
+ default public boolean hasGroupSet()
+ {
+ return getGroupSet()!=null;
+ }
+
default boolean hasGroups() {
- return false;
+ return hasGroupSet() && getGroupSet().hasGroups();
}
+
+
default BitSet getGroupsFor(int column) {
+ if (!hasGroupSet())
+ {
BitSet colbitset = new BitSet();
colbitset.set(column);
return colbitset;
+ }
+ return getGroupSet().getGroupsFor(column);
}
default List<BitSet> getGroups() {
+ if (!hasGroupSet())
+ {
return Arrays.asList();
+ }
+ return getGroupSet().getGroups();
}
default boolean hasTree() {
- return false;
+ return hasGroupSet() ? getGroupSet().hasTree() : false;
}
/**
* @return null unless hasTree is true
*/
default String getNewick() {
- return null;
+ return hasGroupSet() ? getGroupSet().getNewick(): null;
}
default String getTreeMethod() {
- return null;
+ return hasGroupSet() ? getGroupSet().getTreeMethod() :null;
}
default boolean hasCutHeight() {
- return false;
+ return hasGroupSet() ? getGroupSet().hasCutHeight() : false;
}
default double getCutHeight() {
- return 0;
+ return hasGroupSet() ? getGroupSet().getCutHeight():0;
}
- void updateGroups(List<BitSet> colGroups);
+ default void updateGroups(List<BitSet> colGroups)
+ {
+ if (hasGroupSet())
+ {
+ getGroupSet().updateGroups(colGroups);
+ }
+ }
- void setColorForGroup(BitSet bs, Color color);
+ default void setColorForGroup(BitSet bs, Color color)
+ {
+ if (hasGroupSet())
+ {
+ getGroupSet().setColorForGroup(bs, color);
+ }
+ }
+
+ default Color getColourForGroup(BitSet bs)
+ {
+ if (hasGroupSet())
+ {
+ return getGroupSet().getColourForGroup(bs);
+ }
+ else
+ {
+ return Color.white;
+ }
+ }
- default Color getColourForGroup(BitSet bs) { return Color.white;}
+ void setGroupSet(GroupSet makeGroups);
}