JAL-2349 allow contact map to be associated with a reference sequence

[jalview.git] / src / jalview / datamodel / ContactMatrixI.java

diff --git a/src/jalview/datamodel/ContactMatrixI.java b/src/jalview/datamodel/ContactMatrixI.java
index 2b7b4ec..c16b457 100644 (file)
--- a/src/jalview/datamodel/ContactMatrixI.java
+++ b/src/jalview/datamodel/ContactMatrixI.java
@@ -9,4 +9,8 @@ public interface ContactMatrixI
 
   float getMax();
 
+  boolean hasReferenceSeq();
+
+  SequenceI getReferenceSeq();
+
 }