Merge branch 'develop' into feature/JAL-1713_overviewInProject

[jalview.git] / src / jalview / datamodel / ContactRange.java

diff --git a/src/jalview/datamodel/ContactRange.java b/src/jalview/datamodel/ContactRange.java
new file mode 100644 (file)
index 0000000..5de8b04
--- /dev/null
+++ b/src/jalview/datamodel/ContactRange.java
@@ -0,0 +1,164 @@
+package jalview.datamodel;
+
+
+/**
+ * bean for max/min positions for a given range
+ * 
+ * @author jprocter
+ *
+ */
+public class ContactRange
+{
+  int minPos;
+
+  double min;
+
+  int maxPos;
+
+  double max;
+
+  int from_column, to_column;
+
+  private double mean;
+
+  /**
+   * update the bean with given values
+   * 
+   * @param from_column
+   * @param to_column
+   * @param minPos
+   * @param min
+   * @param maxPos
+   * @param max
+   */
+  public void update(int from_column, int to_column, int minPos,
+          double min, int maxPos, double max, double mean)
+  {
+    this.from_column = from_column;
+    this.to_column = to_column;
+    this.minPos = minPos;
+    this.min = min;
+    this.maxPos = maxPos;
+    this.max = max;
+    this.mean = mean;
+  }
+
+  /**
+   * @return the minPos
+   */
+  public int getMinPos()
+  {
+    return minPos;
+  }
+
+  /**
+   * @param minPos
+   *          the minPos to set
+   */
+  public void setMinPos(int minPos)
+  {
+    this.minPos = minPos;
+  }
+
+  /**
+   * @return the min
+   */
+  public double getMin()
+  {
+    return min;
+  }
+
+  /**
+   * @param min
+   *          the min to set
+   */
+  public void setMin(double min)
+  {
+    this.min = min;
+  }
+
+  /**
+   * @return the maxPos
+   */
+  public int getMaxPos()
+  {
+    return maxPos;
+  }
+
+  /**
+   * @param maxPos
+   *          the maxPos to set
+   */
+  public void setMaxPos(int maxPos)
+  {
+    this.maxPos = maxPos;
+  }
+
+  /**
+   * @return the max
+   */
+  public double getMax()
+  {
+    return max;
+  }
+
+  /**
+   * @param max
+   *          the max to set
+   */
+  public void setMax(double max)
+  {
+    this.max = max;
+  }
+
+  /**
+   * @return the mean
+   */
+  public double getMean()
+  {
+    return mean;
+  }
+
+  /**
+   * @param mean
+   *          the mean to set
+   */
+  public void setMean(double mean)
+  {
+    this.mean = mean;
+  }
+
+  /**
+   * @return the from_column
+   */
+  public int getFrom_column()
+  {
+    return from_column;
+  }
+
+  /**
+   * @param from_column
+   *          the from_column to set
+   */
+  public void setFrom_column(int from_column)
+  {
+    this.from_column = from_column;
+  }
+
+  /**
+   * @return the to_column
+   */
+  public int getTo_column()
+  {
+    return to_column;
+  }
+
+  /**
+   * @param to_column
+   *          the to_column to set
+   */
+  public void setTo_column(int to_column)
+  {
+    this.to_column = to_column;
+  }
+}