{
return makeGroups(matrix, autoCut, 0, autoCut);
}
- public static GroupSet makeGroups(ContactMatrixI matrix, boolean auto, float thresh,
- boolean abs)
+
+ public static GroupSet makeGroups(ContactMatrixI matrix, boolean auto,
+ float thresh, boolean abs)
{
AverageDistanceEngine clusterer = new AverageDistanceEngine(null, null,
matrix, true);
nodegroups.add(clusterer.getTopNode());
}
}
-
+
List<BitSet> groups = new ArrayList<>();
for (BinaryNode root : nodegroups)
{