public List<SequenceI> showAll(
Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
{
- List<SequenceI> revealedSeqs = new ArrayList<SequenceI>();
+ List<SequenceI> revealedSeqs = new ArrayList<>();
+
+ if (hiddenSequences == null)
+ {
+ return revealedSeqs;
+ }
+
for (int i = 0; i < hiddenSequences.length; i++)
{
if (hiddenSequences[i] != null)
public List<SequenceI> showSequence(int alignmentIndex,
Map<SequenceI, SequenceCollectionI> hiddenRepSequences)
{
- List<SequenceI> revealedSeqs = new ArrayList<SequenceI>();
+ List<SequenceI> revealedSeqs = new ArrayList<>();
SequenceI repSequence = alignment.getSequenceAt(alignmentIndex);
if (repSequence != null && hiddenRepSequences != null
&& hiddenRepSequences.containsKey(repSequence))