JAL-1551 remove temp file in src

[jalview.git] / src / jalview / datamodel / ProfileI.java~

diff --git a/src/jalview/datamodel/ProfileI.java~ b/src/jalview/datamodel/ProfileI.java~
deleted file mode 100644 (file)
index cf2b394..0000000
--- a/src/jalview/datamodel/ProfileI.java~
+++ /dev/null
@@ -1,67 +0,0 @@
-package jalview.datamodel;
-
-public interface ProfileI
-{
-
-  /**
-   * Set the full profile of counts
-   * 
-   * @param residueCounts
-   */
-  public abstract void setCounts(ResidueCount residueCounts);
-
-  /**
-   * Returns the percentage identity of the profile, i.e. the highest proportion
-   * of conserved (equal) symbols. The percentage is as a fraction of all
-   * sequences, or only ungapped sequences if flag ignoreGaps is set true.
-   * 
-   * @param ignoreGaps
-   * @return
-   */
-  public abstract float getPercentageIdentity(boolean ignoreGaps);
-
-  /**
-   * Returns the full symbol counts for this profile
-   * 
-   * @return
-   */
-  public abstract ResidueCount getCounts();
-
-  /**
-   * Returns the number of sequences in the profile
-   * 
-   * @return
-   */
-  public abstract int getHeight();
-
-  /**
-   * Returns the number of sequences in the profile which had a gap character
-   * (or were too short to be included in this column's profile)
-   * 
-   * @return
-   */
-  public abstract int getGapped();
-
-  /**
-   * Returns the highest count for any symbol(s) in the profile
-   * 
-   * @return
-   */
-  public abstract int getMaxCount();
-
-  /**
-   * Returns the symbol (or concatenated symbols) which have the highest count
-   * in the profile, or an empty string if there were no symbols counted
-   * 
-   * @return
-   */
-  public abstract String getModalResidue();
-
-  /**
-   * Answers the number of non-gapped sequences in the profile
-   * 
-   * @return
-   */
-  public abstract int getNonGapped();
-
-}
\ No newline at end of file