JAL-4062 appendResult(seq,start,end) called by structureSelectionManager sweep-search...

[jalview.git] / src / jalview / datamodel / SearchResultMatchI.java

diff --git a/src/jalview/datamodel/SearchResultMatchI.java b/src/jalview/datamodel/SearchResultMatchI.java
index 732f1dc..dedb960 100644 (file)
--- a/src/jalview/datamodel/SearchResultMatchI.java
+++ b/src/jalview/datamodel/SearchResultMatchI.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.datamodel;
 
 /**
@@ -27,4 +47,23 @@ public interface SearchResultMatchI
    */
   int getEnd();
 
+  /**
+   * Answers true if this match is for the given sequence and includes (matches
+   * or encloses) the given start-end range
+   * 
+   * @param seq
+   * @param start
+   * @param end
+   * @return
+   */
+  boolean contains(SequenceI seq, int start, int end);
+
+  /**
+   *
+   * @param seq
+   * @param from - first position to highlight
+   * @param to - last position to highlight (assumed higher than from)
+   * @return true iff from-to intersects or marks positions either side of start/end
+   */
+  boolean adjacent(SequenceI seq, int from, int to);
 }
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