import jalview.datamodel.SearchResults.Match;
+import java.util.BitSet;
import java.util.List;
public interface SearchResultsI
*/
public abstract List<Match> getResults();
+ /**
+ * Set bits in a bitfield for all columns in the given sequence collection
+ * that are highlighted
+ *
+ * @param sqcol
+ * the set of sequences to search for highlighted regions
+ * @param bs
+ * bitset to set
+ * @return number of bits set
+ */
+ public abstract int markColumns(SequenceCollectionI sqcol, BitSet bs);
}
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