JAL-1551 remove temp file in src

[jalview.git] / src / jalview / datamodel / SearchResultsI.java~

diff --git a/src/jalview/datamodel/SearchResultsI.java~ b/src/jalview/datamodel/SearchResultsI.java~
deleted file mode 100644 (file)
index 93183f2..0000000
--- a/src/jalview/datamodel/SearchResultsI.java~
+++ /dev/null
@@ -1,84 +0,0 @@
-package jalview.datamodel;
-
-import java.util.BitSet;
-import java.util.List;
-
-/**
- * An interface describing the result of a search or other operation which
- * highlights matched regions of an alignment
- */
-public interface SearchResultsI
-{
-
-  /**
-   * Adds one region to the results
-   * 
-   * @param seq
-   *          Sequence
-   * @param start
-   *          int
-   * @param end
-   *          int
-   * @return
-   */
-  SearchResultMatchI addResult(SequenceI seq, int start, int end);
-
-  /**
-   * Answers true if the search results include the given sequence (or its
-   * dataset sequence), else false
-   * 
-   * @param sequence
-   * @return
-   */
-  boolean involvesSequence(SequenceI sequence);
-
-  /**
-   * Returns an array of [from, to, from, to..] matched columns (base 0) between
-   * the given start and end columns of the given sequence. Returns null if no
-   * matches overlap the specified region.
-   * <p>
-   * Implementations should provide an optimised method to return locations to
-   * highlight on a visible portion of an alignment.
-   * 
-   * @param sequence
-   * @param start
-   *          first column of range (base 0, inclusive)
-   * @param end
-   *          last column of range base 0, inclusive)
-   * @return int[]
-   */
-  int[] getResults(SequenceI sequence, int start, int end);
-
-  /**
-   * Returns the number of matches found
-   * 
-   * @return
-   */
-  int getSize();
-
-  /**
-   * Returns true if no search result matches are held.
-   * 
-   * @return
-   */
-  boolean isEmpty();
-
-  /**
-   * Returns the list of matches.
-   * 
-   * @return
-   */
-  List<SearchResultMatchI> getResults();
-
-  /**
-   * Set bits in a bitfield for all columns in the given sequence collection
-   * that are highlighted
-   * 
-   * @param sqcol
-   *          the set of sequences to search for highlighted regions
-   * @param bs
-   *          bitset to set
-   * @return number of bits set
-   */
-  int markColumns(SequenceCollectionI sqcol, BitSet bs);
-}
\ No newline at end of file