Merge branch 'feature/JAL-2909bamfiles_features' into features/JAL-2909_bamImport2_11

[jalview.git] / src / jalview / datamodel / SeqCigar.java

diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java
index c2a6a9c..afe10fc 100644 (file)
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -467,25 +467,6 @@ public class SeqCigar extends CigarSimple
   }
 
   /**
-   * Create a cigar object from a cigar string like '[<I|D|M><range>]+' Will
-   * fail if the given seq already contains gaps (JBPNote: future implementation
-   * will fix)
-   * 
-   * @param seq
-   *          SequenceI object resolvable to a dataset sequence
-   * @param cigarString
-   *          String
-   * @return Cigar
-   */
-  public static SeqCigar parseCigar(SequenceI seq, String cigarString)
-          throws Exception
-  {
-    Object[] opsandrange = parseCigarString(cigarString);
-    return new SeqCigar(seq, (char[]) opsandrange[0],
-            (int[]) opsandrange[1]);
-  }
-
-  /**
    * create an alignment from the given array of cigar sequences and gap
    * character, and marking the given segments as visible in the given
    * hiddenColumns.