JAL-1807 explicit imports (jalview.datamodel)

[jalview.git] / src / jalview / datamodel / SeqCigar.java

diff --git a/src/jalview/datamodel/SeqCigar.java b/src/jalview/datamodel/SeqCigar.java
index 09b2e89..b6c8cdc 100644 (file)
--- a/src/jalview/datamodel/SeqCigar.java
+++ b/src/jalview/datamodel/SeqCigar.java
@@ -20,14 +20,15 @@
  */
 package jalview.datamodel;
 
-import java.util.Enumeration;
-import java.util.Hashtable;
-
 import jalview.analysis.AlignSeq;
 import jalview.analysis.SeqsetUtils;
+import jalview.util.Comparison;
 import jalview.util.MessageManager;
 import jalview.util.ShiftList;
 
+import java.util.Enumeration;
+import java.util.Hashtable;
+
 public class SeqCigar extends CigarSimple
 {
   /**
@@ -165,7 +166,7 @@ public class SeqCigar extends CigarSimple
     {
       // make a new dataset sequence
       String ungapped = AlignSeq.extractGaps(
-              jalview.util.Comparison.GapChars, new String(seq_string));
+              Comparison.GapChars, new String(seq_string));
       l_ungapped = ungapped.length();
       // check that we haven't just duplicated an ungapped sequence.
       if (l_ungapped == seq.getLength())
@@ -318,7 +319,7 @@ public class SeqCigar extends CigarSimple
 
     while (p <= endpos)
     {
-      boolean isGap = (p < res) ? jalview.util.Comparison.isGap(seq
+      boolean isGap = (p < res) ? Comparison.isGap(seq
               .getCharAt(p)) : true;
       if ((startpos <= p) && (p <= endpos))
       {