AlignmentAnnotation aa = cmholder.addContactList(cm);
Annotation _aa[] = new Annotation[getLength()];
-
+
for (int i = 0; i < _aa.length; _aa[i++] = new Annotation(0.0f))
{
;
}
aa.annotations = _aa;
aa.setSequenceRef(this);
- if (cm instanceof MappableContactMatrix && !((MappableContactMatrix) cm).hasReferenceSeq())
+ if (cm instanceof MappableContactMatrix
+ && !((MappableContactMatrix) cm).hasReferenceSeq())
{
((MappableContactMatrix) cm).setRefSeq(this);
}