JAL-1693 make exon alignment for get-xref splitframe (with CDS xref)

[jalview.git] / src / jalview / datamodel / Sequence.java

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index 5c1fba5..65d8179 100755 (executable)
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -20,9 +20,6 @@
  */
 package jalview.datamodel;
 
-import jalview.analysis.AlignSeq;
-import jalview.util.StringUtils;
-
 import java.util.ArrayList;
 import java.util.Enumeration;
 import java.util.List;
@@ -30,6 +27,9 @@ import java.util.Vector;
 
 import fr.orsay.lri.varna.models.rna.RNA;
 
+import jalview.analysis.AlignSeq;
+import jalview.util.StringUtils;
+
 /**
  * 
  * Implements the SequenceI interface for a char[] based sequence object.
@@ -51,7 +51,7 @@ public class Sequence implements SequenceI
 
   int end;
 
-  Vector pdbIds;
+  Vector<PDBEntry> pdbIds;
 
   String vamsasId;
 
@@ -353,7 +353,7 @@ public class Sequence implements SequenceI
   {
     if (pdbIds == null)
     {
-      pdbIds = new Vector();
+      pdbIds = new Vector<PDBEntry>();
     }
     if (!pdbIds.contains(entry))
     {