JAL-2599 test coverage and bug fixes for 'minimal file' parsing

[jalview.git] / src / jalview / datamodel / Sequence.java

diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java
index e798525..9398c0b 100755 (executable)
--- a/src/jalview/datamodel/Sequence.java
+++ b/src/jalview/datamodel/Sequence.java
@@ -1918,8 +1918,7 @@ public class Sequence extends ASequence implements SequenceI
       hmm.clearNodeLookup();
       for (int i = 0; i < getLength(); i++)
       {
-        if (rf.annotations[i].displayCharacter.equals("x")
-                || rf.annotations[i].displayCharacter.equals("X"))
+        if (rf.annotations[i].displayCharacter.equalsIgnoreCase("x"))
         {
           if (i < hmm.getNodeAlignmentColumn(node))
           {