JAL-1796 GeneLociI as distinguished DBRefEntry

[jalview.git] / src / jalview / datamodel / SequenceI.java

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 7cbb730..03fc545 100755 (executable)
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -21,6 +21,7 @@
 package jalview.datamodel;
 
 import jalview.datamodel.features.SequenceFeaturesI;
+import jalview.util.MapList;
 
 import java.util.BitSet;
 import java.util.List;
@@ -535,7 +536,8 @@ public interface SequenceI extends ASequenceI
    */
   public int replace(char c1, char c2);
 
-  public abstract GeneLoci getGeneLoci();
+  GeneLociI getGeneLoci();
 
-  public abstract void setGeneLoci(GeneLoci gl);
+  void setGeneLoci(String speciesId, String assemblyId,
+          String chromosomeId, MapList map);
 }