Formatted source

[jalview.git] / src / jalview / datamodel / SequenceI.java

diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java
index 9c2ab48..f16c009 100755 (executable)
--- a/src/jalview/datamodel/SequenceI.java
+++ b/src/jalview/datamodel/SequenceI.java
@@ -16,62 +16,67 @@
 * along with this program; if not, write to the Free Software\r
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
-\r
 package jalview.datamodel;\r
 \r
 import jalview.jbgui.*;\r
+\r
 import java.awt.*;\r
 \r
 import java.util.Vector;\r
 \r
+\r
 public interface SequenceI {\r
-  public void        setName(String name);\r
-  public String      getName();\r
+    public void setName(String name);\r
+\r
+    public String getName();\r
+\r
+    public void setStart(int start);\r
+\r
+    public int getStart();\r
+\r
+    public String getDisplayId();\r
 \r
-  public void        setStart(int start);\r
-  public int         getStart();\r
+    public void setEnd(int end);\r
 \r
-  public String      getDisplayId();\r
+    public int getEnd();\r
 \r
-  public void        setEnd(int end);\r
-  public int         getEnd();\r
+    public int getLength();\r
 \r
-  public int         getLength();\r
+    public void setSequence(String sequence);\r
 \r
-  public void        setSequence(String sequence);\r
-  public String      getSequence();\r
-  public String      getSequence(int start,int end);\r
-  public char        getCharAt(int i);\r
+    public String getSequence();\r
 \r
-  public void        setDescription(String desc);\r
-  public String      getDescription();\r
+    public String getSequence(int start, int end);\r
 \r
-  public int         findIndex(int pos);\r
-  public int         findPosition(int i);\r
-  public int[]         gapMap();\r
-  public void       deleteChars(int i, int j);\r
-  public void       deleteCharAt(int i);\r
-  public void       insertCharAt(int i, char c);\r
-  public void       insertCharAt(int i,char c,boolean chop);\r
+    public char getCharAt(int i);\r
 \r
-  public void        setColor(Color c);\r
-  public Color       getColor();\r
+    public void setDescription(String desc);\r
 \r
-  public Vector     getSequenceFeatures();\r
-  public void       setSequenceFeatures(Vector v);\r
+    public String getDescription();\r
 \r
-  public void setPDBId(String id);\r
-  public String getPDBId();\r
+    public int findIndex(int pos);\r
 \r
-  }\r
+    public int findPosition(int i);\r
 \r
+    public int[] gapMap();\r
 \r
+    public void deleteChars(int i, int j);\r
 \r
+    public void deleteCharAt(int i);\r
 \r
+    public void insertCharAt(int i, char c);\r
 \r
+    public void insertCharAt(int i, char c, boolean chop);\r
 \r
+    public void setColor(Color c);\r
 \r
+    public Color getColor();\r
 \r
+    public Vector getSequenceFeatures();\r
 \r
+    public void setSequenceFeatures(Vector v);\r
 \r
+    public void setPDBId(String id);\r
 \r
+    public String getPDBId();\r
+}\r