package jalview.datamodel;
/**
- * DOCUMENT ME!
- *
- * @author $author$
- * @version $Revision$
+ * A bean that models a point with (x, y, z) coordinates and a reference to a
+ * sequence
*/
public class SequencePoint
{
- // SMJS PUBLIC
- /**
- * for points with no real physical association with an alignment sequence
+ /*
+ * Associated alignment sequence, or dummy sequence object
*/
- public boolean isPlaceholder = false;
+ private final SequenceI sequence;
- /**
- * Associated alignment sequence, or dummy sequence object.
+ /*
+ * array of coordinates in embedded sequence space
*/
- public SequenceI sequence;
+ public float[] coord;
/**
- * array of coordinates in embedded sequence space.
+ * Constructor
+ *
+ * @param sequence
+ * @param coord
*/
- public float[] coord;
-
- // SMJS ENDPUBLIC
public SequencePoint(SequenceI sequence, float[] coord)
{
this.sequence = sequence;
this.coord = coord;
}
+
+ public SequenceI getSequence()
+ {
+ return sequence;
+ }
}