JAL-1588 new class renamed

[jalview.git] / src / jalview / datamodel / StructureViewerModel.java

diff --git a/src/jalview/datamodel/StructureViewerModel.java b/src/jalview/datamodel/StructureViewerModel.java
new file mode 100644 (file)
index 0000000..098372b
--- /dev/null
+++ b/src/jalview/datamodel/StructureViewerModel.java
@@ -0,0 +1,189 @@
+package jalview.datamodel;
+
+import java.io.File;
+import java.util.ArrayList;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+/**
+ * A data bean to hold stored data about a structure viewer.
+ */
+public class StructureViewerModel
+{
+  private int x;
+
+  private int y;
+
+  private int width;
+
+  private int height;
+
+  private boolean alignWithPanel;
+
+  private boolean colourWithAlignPanel;
+
+  private boolean colourByViewer;
+
+  private String stateData = "";
+
+  private Map<File, StructureData> fileData = new HashMap<File, StructureData>();
+
+  public class StructureData
+  {
+    private String filePath;
+
+    private String pdbId;
+
+    private List<SequenceI> seqList;
+
+    // TODO and possibly a list of chains?
+
+    /**
+     * Constructor given structure file path and id.
+     * 
+     * @param pdbFile
+     * @param id
+     */
+    public StructureData(String pdbFile, String id)
+    {
+      this.filePath = pdbFile;
+      this.pdbId = id;
+      this.seqList = new ArrayList<SequenceI>();
+    }
+
+    public String getFilePath()
+    {
+      return filePath;
+    }
+
+    protected void setFilePath(String filePath)
+    {
+      this.filePath = filePath;
+    }
+
+    public String getPdbId()
+    {
+      return pdbId;
+    }
+
+    protected void setPdbId(String pdbId)
+    {
+      this.pdbId = pdbId;
+    }
+
+    public List<SequenceI> getSeqList()
+    {
+      return seqList;
+    }
+
+    protected void setSeqList(List<SequenceI> seqList)
+    {
+      this.seqList = seqList;
+    }
+  }
+
+  public StructureViewerModel(int x, int y, int width, int height,
+          boolean alignWithPanel, boolean colourWithAlignPanel,
+          boolean colourByViewer)
+  {
+    this.x = x;
+    this.y = y;
+    this.width = width;
+    this.height = height;
+    this.alignWithPanel = alignWithPanel;
+    this.colourWithAlignPanel = colourWithAlignPanel;
+    this.colourByViewer = colourByViewer;
+  }
+
+  public int getX()
+  {
+    return x;
+  }
+
+  protected void setX(int x)
+  {
+    this.x = x;
+  }
+
+  public int getY()
+  {
+    return y;
+  }
+
+  protected void setY(int y)
+  {
+    this.y = y;
+  }
+
+  public int getWidth()
+  {
+    return width;
+  }
+
+  protected void setWidth(int width)
+  {
+    this.width = width;
+  }
+
+  public int getHeight()
+  {
+    return height;
+  }
+
+  public void setHeight(int height)
+  {
+    this.height = height;
+  }
+
+  public boolean isAlignWithPanel()
+  {
+    return alignWithPanel;
+  }
+
+  public void setAlignWithPanel(boolean alignWithPanel)
+  {
+    this.alignWithPanel = alignWithPanel;
+  }
+
+  public boolean isColourWithAlignPanel()
+  {
+    return colourWithAlignPanel;
+  }
+
+  public void setColourWithAlignPanel(boolean colourWithAlignPanel)
+  {
+    this.colourWithAlignPanel = colourWithAlignPanel;
+  }
+
+  public boolean isColourByViewer()
+  {
+    return colourByViewer;
+  }
+
+  public void setColourByViewer(boolean colourByViewer)
+  {
+    this.colourByViewer = colourByViewer;
+  }
+
+  public String getStateData()
+  {
+    return stateData;
+  }
+
+  public void setStateData(String stateData)
+  {
+    this.stateData = stateData;
+  }
+
+  public Map<File, StructureData> getFileData()
+  {
+    return fileData;
+  }
+
+  protected void setFileData(Map<File, StructureData> fileData)
+  {
+    this.fileData = fileData;
+  }
+
+}