Formatted source

[jalview.git] / src / jalview / datamodel / SuperGroup.java

diff --git a/src/jalview/datamodel/SuperGroup.java b/src/jalview/datamodel/SuperGroup.java
index cd86ef6..ad6f703 100755 (executable)
--- a/src/jalview/datamodel/SuperGroup.java
+++ b/src/jalview/datamodel/SuperGroup.java
@@ -16,99 +16,88 @@
 * along with this program; if not, write to the Free Software\r
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
 */\r
-\r
 package jalview.datamodel;\r
 \r
-import jalview.schemes.*;\r
 import jalview.analysis.*;\r
+\r
 import jalview.datamodel.*;\r
+\r
+import jalview.schemes.*;\r
+\r
 import java.util.*;\r
 \r
-public class SuperGroup\r
-{\r
-  String groupName;\r
-  boolean displayBoxes;\r
-  boolean displayText;\r
-  boolean colourText;\r
-  public ColourSchemeI cs;\r
-  Vector sequenceGroups = new Vector();\r
-\r
-  public SuperGroup()\r
-  {\r
-    groupName = "Super group";\r
-    this.displayBoxes = true;\r
-    this.displayText = true;\r
-    this.colourText = false;\r
-    cs = null;\r
-  }\r
-\r
-\r
-  public SuperGroup(String groupName, ColourSchemeI scheme,\r
-                       boolean displayBoxes, boolean displayText,\r
-                       boolean colourText)\r
-     {\r
-       this.groupName = groupName;\r
-       this.displayBoxes = displayBoxes;\r
-       this.displayText = displayText;\r
-       this.colourText = colourText;\r
-       this.cs = scheme;\r
-     }\r
-\r
-  public String getName()\r
-  {\r
-    return groupName;\r
-  }\r
-\r
-  public void setName(String name)\r
-  {\r
-    groupName = name;\r
-  }\r
-\r
-\r
-  public void addGroup(SequenceGroup sg)\r
-  {\r
-    if(!sequenceGroups.contains(sg))\r
-      sequenceGroups.addElement(sg);\r
-  }\r
-\r
-  public void addOrRemove(SequenceGroup sg)\r
-  {\r
-    if(sequenceGroups.contains(sg))\r
-      deleteGroup(sg);\r
-    else\r
-      addGroup(sg);\r
-  }\r
-\r
-  public void deleteGroup(SequenceGroup sg)\r
-  {\r
-    sequenceGroups.removeElement(sg);\r
-  }\r
-\r
-  public void setSuperGroupProperties(SequenceGroup sg)\r
-  {\r
-    cs = sg.cs;\r
-    colourText = sg.colourText;\r
-    displayText = sg.displayText;\r
-    displayBoxes = sg.displayBoxes;\r
-\r
-    for(int i=0; i<sequenceGroups.size(); i++)\r
-    {\r
-      SequenceGroup temp = (SequenceGroup)sequenceGroups.elementAt(i);\r
-      temp.cs = sg.cs;\r
-      temp.colourText = sg.colourText;\r
-      temp.displayText = sg.displayText;\r
-      temp.displayBoxes = sg.displayBoxes;\r
+\r
+public class SuperGroup {\r
+    String groupName;\r
+    boolean displayBoxes;\r
+    boolean displayText;\r
+    boolean colourText;\r
+    public ColourSchemeI cs;\r
+    Vector sequenceGroups = new Vector();\r
+\r
+    public SuperGroup() {\r
+        groupName = "Super group";\r
+        this.displayBoxes = true;\r
+        this.displayText = true;\r
+        this.colourText = false;\r
+        cs = null;\r
+    }\r
+\r
+    public SuperGroup(String groupName, ColourSchemeI scheme,\r
+        boolean displayBoxes, boolean displayText, boolean colourText) {\r
+        this.groupName = groupName;\r
+        this.displayBoxes = displayBoxes;\r
+        this.displayText = displayText;\r
+        this.colourText = colourText;\r
+        this.cs = scheme;\r
+    }\r
+\r
+    public String getName() {\r
+        return groupName;\r
     }\r
-  }\r
 \r
+    public void setName(String name) {\r
+        groupName = name;\r
+    }\r
+\r
+    public void addGroup(SequenceGroup sg) {\r
+        if (!sequenceGroups.contains(sg)) {\r
+            sequenceGroups.addElement(sg);\r
+        }\r
+    }\r
 \r
-  public int getSize()\r
-  {\r
-    return sequenceGroups.size();\r
-  }\r
+    public void addOrRemove(SequenceGroup sg) {\r
+        if (sequenceGroups.contains(sg)) {\r
+            deleteGroup(sg);\r
+        } else {\r
+            addGroup(sg);\r
+        }\r
+    }\r
+\r
+    public void deleteGroup(SequenceGroup sg) {\r
+        sequenceGroups.removeElement(sg);\r
+    }\r
 \r
-  public SequenceGroup getGroupeAt(int i)\r
-  {\r
-    return (SequenceGroup) sequenceGroups.elementAt(i);\r
-  }\r
+    public void setSuperGroupProperties(SequenceGroup sg) {\r
+        cs = sg.cs;\r
+        colourText = sg.colourText;\r
+        displayText = sg.displayText;\r
+        displayBoxes = sg.displayBoxes;\r
+\r
+        for (int i = 0; i < sequenceGroups.size(); i++) {\r
+            SequenceGroup temp = (SequenceGroup) sequenceGroups.elementAt(i);\r
+            temp.cs = sg.cs;\r
+            temp.colourText = sg.colourText;\r
+            temp.displayText = sg.displayText;\r
+            temp.displayBoxes = sg.displayBoxes;\r
+        }\r
+    }\r
+\r
+    public int getSize() {\r
+        return sequenceGroups.size();\r
+    }\r
+\r
+    public SequenceGroup getGroupeAt(int i) {\r
+        return (SequenceGroup) sequenceGroups.elementAt(i);\r
+    }\r
 }\r