JAL-3365 expand range of allowed DSSP secondary structure symbols in Stockholm files

[jalview.git] / src / jalview / datamodel / VisibleColsCollection.java

diff --git a/src/jalview/datamodel/VisibleColsCollection.java b/src/jalview/datamodel/VisibleColsCollection.java
index 8ec1a99..4ca51b5 100644 (file)
--- a/src/jalview/datamodel/VisibleColsCollection.java
+++ b/src/jalview/datamodel/VisibleColsCollection.java
@@ -27,21 +27,22 @@ import java.util.Iterator;
 public class VisibleColsCollection implements AlignmentColsCollectionI
 {
   int start;
+
   int end;
 
   HiddenColumns hidden;
 
-  public VisibleColsCollection(int s, int e, AlignmentI al)
+  public VisibleColsCollection(int s, int e, HiddenColumns h)
   {
     start = s;
     end = e;
-    hidden = al.getHiddenColumns();
+    hidden = h;
   }
 
   @Override
   public Iterator<Integer> iterator()
   {
-    return new VisibleColsIterator(start, end, hidden);
+    return hidden.getVisibleColsIterator(start, end);
   }
 
   @Override