JAL-2759 unit tests for VisibleContigsIterator

[jalview.git] / src / jalview / datamodel / VisibleContigsIterator.java

diff --git a/src/jalview/datamodel/VisibleContigsIterator.java b/src/jalview/datamodel/VisibleContigsIterator.java
index d98121a..6d3f43d 100644 (file)
--- a/src/jalview/datamodel/VisibleContigsIterator.java
+++ b/src/jalview/datamodel/VisibleContigsIterator.java
@@ -39,9 +39,17 @@ public class VisibleContigsIterator implements Iterator<int[]>
         }
         if (hideStart > vstart)
         {
-          int[] contig = new int[] { vstart, hideStart - 1 };
-          vcontigs.add(contig);
-          endsAtHidden = true;
+          if (end - 1 > hideStart - 1)
+          {
+            int[] contig = new int[] { vstart, hideStart - 1 };
+            vcontigs.add(contig);
+            endsAtHidden = true;
+          }
+          else
+          {
+            int[] contig = new int[] { vstart, end - 1 };
+            vcontigs.add(contig);
+          }
         }
         vstart = hideEnd + 1;