import java.util.HashMap;
import java.util.List;
import java.util.Map;
-import java.util.Set;
-import java.util.TreeSet;
+import java.util.TreeMap;
/**
* A singleton class to hold the set of attributes known for each feature type
{
private static FeatureAttributes instance = new FeatureAttributes();
- private Map<String, Set<String>> attributes;
+ private Map<String, Map<String, AttributeData>> attributes;
+
+ private class AttributeData
+ {
+ /*
+ * description(s) for this attribute, if known
+ * (different feature source might have differing descriptions)
+ */
+ List<String> description;
+
+ /*
+ * minimum value (of any numeric values recorded)
+ */
+ float min = 0f;
+
+ /*
+ * maximum value (of any numeric values recorded)
+ */
+ float max = 0f;
+
+ /*
+ * flag is set true if any numeric value is detected for this attribute
+ */
+ boolean hasValue = false;
+
+ /**
+ * Note one instance of this attribute, recording unique, non-null names,
+ * and the min/max of any numerical values
+ *
+ * @param desc
+ * @param value
+ */
+ void addInstance(String desc, String value)
+ {
+ addDescription(desc);
+
+ if (value != null)
+ {
+ try
+ {
+ float f = Float.valueOf(value);
+ min = Float.min(min, f);
+ max = Float.max(max, f);
+ hasValue = true;
+ } catch (NumberFormatException e)
+ {
+ // ok, wasn't a number, ignore for min-max purposes
+ }
+ }
+ }
+
+ /**
+ * Answers the description of the attribute, if recorded and unique, or null if either no, or more than description is recorded
+ * @return
+ */
+ public String getDescription()
+ {
+ if (description != null && description.size() == 1)
+ {
+ return description.get(0);
+ }
+ return null;
+ }
+
+ /**
+ * Adds the given description to the list of known descriptions (without
+ * duplication)
+ *
+ * @param desc
+ */
+ public void addDescription(String desc)
+ {
+ if (desc != null)
+ {
+ if (description == null)
+ {
+ description = new ArrayList<>();
+ }
+ if (!description.contains(desc))
+ {
+ description.add(desc);
+ }
+ }
+ }
+ }
/**
* Answers the singleton instance of this class
return Collections.<String> emptyList();
}
- return new ArrayList<>(attributes.get(featureType));
+ return new ArrayList<>(attributes.get(featureType).keySet());
}
/**
*/
public boolean hasAttributes(String featureType)
{
-
if (attributes.containsKey(featureType))
{
if (!attributes.get(featureType).isEmpty())
}
/**
- * Records the given attribute name for the given feature type
+ * Records the given attribute name and description for the given feature
+ * type, and updates the min-max for any numeric value
*
* @param featureType
* @param attName
+ * @param description
+ * @param value
*/
- public void addAttribute(String featureType, String attName)
+ public void addAttribute(String featureType, String attName,
+ String description, String value)
{
if (featureType == null || attName == null)
{
return;
}
- if (!attributes.containsKey(featureType))
+ Map<String, AttributeData> atts = attributes.get(featureType);
+ if (atts == null)
+ {
+ atts = new TreeMap<String, AttributeData>(
+ String.CASE_INSENSITIVE_ORDER);
+ attributes.put(featureType, atts);
+ }
+ AttributeData attData = atts.get(attName);
+ if (attData == null)
{
- attributes.put(featureType, new TreeSet<String>(
- String.CASE_INSENSITIVE_ORDER));
+ attData = new AttributeData();
+ atts.put(attName, attData);
}
+ attData.addInstance(description, value);
+ }
- attributes.get(featureType).add(attName);
+ /**
+ * Answers the description of the given attribute for the given feature type,
+ * if known and unique, else null
+ *
+ * @param featureType
+ * @param attName
+ * @return
+ */
+ public String getDescription(String featureType, String attName)
+ {
+ String desc = null;
+ Map<String, AttributeData> atts = attributes.get(featureType);
+ if (atts != null)
+ {
+ AttributeData attData = atts.get(attName);
+ if (attData != null)
+ {
+ desc = attData.getDescription();
+ }
+ }
+ return desc;
+ }
+
+ /**
+ * Answers the [min, max] value range of the given attribute for the given
+ * feature type, if known, else null. Attributes which only have text values
+ * would normally return null, however text values which happen to be numeric
+ * could result in a 'min-max' range.
+ *
+ * @param featureType
+ * @param attName
+ * @return
+ */
+ public float[] getMinMax(String featureType, String attName)
+ {
+ Map<String, AttributeData> atts = attributes.get(featureType);
+ if (atts != null)
+ {
+ AttributeData attData = atts.get(attName);
+ if (attData != null && attData.hasValue)
+ {
+ return new float[] { attData.min, attData.max };
+ }
+ }
+ return null;
+ }
+
+ /**
+ * Records the given attribute description for the given feature type
+ *
+ * @param featureType
+ * @param attName
+ * @param description
+ */
+ public void addDescription(String featureType, String attName,
+ String description)
+ {
+ if (featureType == null || attName == null)
+ {
+ return;
+ }
+
+ Map<String, AttributeData> atts = attributes.get(featureType);
+ if (atts == null)
+ {
+ atts = new TreeMap<String, AttributeData>(
+ String.CASE_INSENSITIVE_ORDER);
+ attributes.put(featureType, atts);
+ }
+ AttributeData attData = atts.get(attName);
+ if (attData == null)
+ {
+ attData = new AttributeData();
+ atts.put(attName, attData);
+ }
+ attData.addDescription(description);
}
}
git://source.jalview.org / jalview.git / blobdiff