JAL-3253-applet JAL-3383 Overview speed up -- see Issue comments.

[jalview.git] / src / jalview / datamodel / features / SequenceFeatures.java

diff --git a/src/jalview/datamodel/features/SequenceFeatures.java b/src/jalview/datamodel/features/SequenceFeatures.java
index 9925f2b..93ee71b 100644 (file)
--- a/src/jalview/datamodel/features/SequenceFeatures.java
+++ b/src/jalview/datamodel/features/SequenceFeatures.java
@@ -109,12 +109,10 @@ public class SequenceFeatures implements SequenceFeaturesI
           String... type)
   {
     List<SequenceFeature> result = new ArrayList<>();
-
     for (FeatureStore featureSet : varargToTypes(type))
     {
       result.addAll(featureSet.findOverlappingFeatures(from, to));
     }
-
     return result;
   }
 
@@ -219,6 +217,7 @@ public class SequenceFeatures implements SequenceFeaturesI
       return featureStore.values();
     }
 
+
     List<FeatureStore> types = new ArrayList<>();
     List<String> args = Arrays.asList(type);
     for (Entry<String, FeatureStore> featureType : featureStore.entrySet())
@@ -465,4 +464,21 @@ public class SequenceFeatures implements SequenceFeaturesI
   {
     featureStore.clear();
   }
+
+  /**
+   * Simplified find for features associated with a given position.
+   * 
+   * @author Bob Hanson 2019.07.30
+   */
+  @Override
+  public void findFeatures(int pos, String type, List<SequenceFeature> list)
+  {
+    FeatureStore fs = featureStore.get(type);
+    if (fs != null)
+    {
+      fs.findOverlappingFeatures(pos, list);
+    }
+  }
+
+
 }