JAL-3010 discover root parent SO terms at runtime

[jalview.git] / src / jalview / datamodel / ontology / OntologyBase.java

diff --git a/src/jalview/datamodel/ontology/OntologyBase.java b/src/jalview/datamodel/ontology/OntologyBase.java
index 25dae22..8bdebbd 100644 (file)
--- a/src/jalview/datamodel/ontology/OntologyBase.java
+++ b/src/jalview/datamodel/ontology/OntologyBase.java
@@ -1,8 +1,10 @@
 package jalview.datamodel.ontology;
 
 import java.util.ArrayList;
+import java.util.HashMap;
 import java.util.HashSet;
 import java.util.List;
+import java.util.Map;
 import java.util.Set;
 
 /**
@@ -13,6 +15,8 @@ import java.util.Set;
  */
 public abstract class OntologyBase implements OntologyI
 {
+  protected Map<String, List<String>> rootParents = new HashMap<>();
+
   @Override
   public Set<String> getParentTerms(Set<String> terms)
   {