JAL-1712 fixes/tests for Castor binding and 'show flanking regions'

[jalview.git] / src / jalview / datamodel / xdb / embl / EmblFeature.java

diff --git a/src/jalview/datamodel/xdb/embl/EmblFeature.java b/src/jalview/datamodel/xdb/embl/EmblFeature.java
index 077788c..7f53eb3 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblFeature.java
+++ b/src/jalview/datamodel/xdb/embl/EmblFeature.java
@@ -22,20 +22,27 @@ package jalview.datamodel.xdb.embl;
 
 import java.util.Vector;
 
+import jalview.datamodel.DBRefEntry;
+
+/**
+ * Data model for a <feature> element returned from an EMBL query reply
+ * 
+ * @see embl_mapping.xml
+ */
 public class EmblFeature
 {
   String name;
 
-  Vector dbRefs;
+  Vector<DBRefEntry> dbRefs;
 
-  Vector qualifiers;
+  Vector<Qualifier> qualifiers;
 
-  Vector locations;
+  Vector<EmblFeatureLocations> locations;
 
   /**
    * @return the dbRefs
    */
-  public Vector getDbRefs()
+  public Vector<DBRefEntry> getDbRefs()
   {
     return dbRefs;
   }
@@ -44,7 +51,7 @@ public class EmblFeature
    * @param dbRefs
    *          the dbRefs to set
    */
-  public void setDbRefs(Vector dbRefs)
+  public void setDbRefs(Vector<DBRefEntry> dbRefs)
   {
     this.dbRefs = dbRefs;
   }
@@ -52,7 +59,7 @@ public class EmblFeature
   /**
    * @return the locations
    */
-  public Vector getLocations()
+  public Vector<EmblFeatureLocations> getLocations()
   {
     return locations;
   }
@@ -61,7 +68,7 @@ public class EmblFeature
    * @param locations
    *          the locations to set
    */
-  public void setLocations(Vector locations)
+  public void setLocations(Vector<EmblFeatureLocations> locations)
   {
     this.locations = locations;
   }
@@ -86,7 +93,7 @@ public class EmblFeature
   /**
    * @return the qualifiers
    */
-  public Vector getQualifiers()
+  public Vector<Qualifier> getQualifiers()
   {
     return qualifiers;
   }
@@ -95,7 +102,7 @@ public class EmblFeature
    * @param qualifiers
    *          the qualifiers to set
    */
-  public void setQualifiers(Vector qualifiers)
+  public void setQualifiers(Vector<Qualifier> qualifiers)
   {
     this.qualifiers = qualifiers;
   }