JAL-3116 Uniprot XML unmarshalled using JAXB not Castor

[jalview.git] / src / jalview / datamodel / xdb / embl / EmblSequence.java

diff --git a/src/jalview/datamodel/xdb/embl/EmblSequence.java b/src/jalview/datamodel/xdb/embl/EmblSequence.java
index 406ef2e..92c424b 100644 (file)
--- a/src/jalview/datamodel/xdb/embl/EmblSequence.java
+++ b/src/jalview/datamodel/xdb/embl/EmblSequence.java
@@ -20,14 +20,15 @@
  */
 package jalview.datamodel.xdb.embl;
 
+/**
+ * Data model for the sequence extracted from an EMBL query reply
+ * 
+ * @see embl_mapping.xml
+ */
 public class EmblSequence
 {
-  String version;
-
   String sequence;
 
-  String type;
-
   /**
    * @return the sequence
    */
@@ -42,40 +43,7 @@ public class EmblSequence
    */
   public void setSequence(String sequence)
   {
-    this.sequence = sequence;
-  }
-
-  /**
-   * @return the type
-   */
-  public String getType()
-  {
-    return type;
-  }
-
-  /**
-   * @param type
-   *          the type to set
-   */
-  public void setType(String type)
-  {
-    this.type = type;
-  }
-
-  /**
-   * @return the version
-   */
-  public String getVersion()
-  {
-    return version;
-  }
-
-  /**
-   * @param version
-   *          the version to set
-   */
-  public void setVersion(String version)
-  {
-    this.version = version;
+    // remove spaces introduced by unmarshalling of newline characters
+    this.sequence = sequence.replace(" ", "");
   }
 }