Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767' into develop

[jalview.git] / src / jalview / datamodel / xdb / embl / Qualifier.java

diff --git a/src/jalview/datamodel/xdb/embl/Qualifier.java b/src/jalview/datamodel/xdb/embl/Qualifier.java
deleted file mode 100644 (file)
index 851dd48..0000000
--- a/src/jalview/datamodel/xdb/embl/Qualifier.java
+++ /dev/null
@@ -1,119 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package jalview.datamodel.xdb.embl;
-
-/**
- * Data model for a &lt;qualifier&gt; child element of a &lt;feature&gt; read
- * from an EMBL query reply
- * 
- * @see embl_mapping.xml
- */
-public class Qualifier
-{
-  String name;
-
-  String[] values;
-
-  String[] evidence;
-
-  /**
-   * @return the name
-   */
-  public String getName()
-  {
-    return name;
-  }
-
-  /**
-   * @param name
-   *          the name to set
-   */
-  public void setName(String name)
-  {
-    this.name = name;
-  }
-
-  /**
-   * @return the values
-   */
-  public String[] getValues()
-  {
-    return values;
-  }
-
-  /**
-   * @param values
-   *          the values to set
-   */
-  public void setValues(String[] values)
-  {
-    this.values = values;
-  }
-
-  public void addEvidence(String qevidence)
-  {
-    // TODO - not used? can remove?
-    if (evidence == null)
-    {
-      evidence = new String[1];
-    }
-    else
-    {
-      String[] temp = new String[evidence.length + 1];
-      System.arraycopy(evidence, 0, temp, 0, evidence.length);
-      evidence = temp;
-    }
-    evidence[evidence.length - 1] = qevidence;
-  }
-
-  public void addValues(String value)
-  {
-    // TODO - not used? can remove?
-    if (values == null)
-    {
-      values = new String[1];
-    }
-    else
-    {
-      String[] temp = new String[values.length + 1];
-      System.arraycopy(values, 0, temp, 0, values.length);
-      values = temp;
-    }
-    values[values.length - 1] = value;
-  }
-
-  /**
-   * @return the evidence
-   */
-  public String[] getEvidence()
-  {
-    return evidence;
-  }
-
-  /**
-   * @param evidence
-   *          the evidence to set
-   */
-  public void setEvidence(String[] evidence)
-  {
-    this.evidence = evidence;
-  }
-}