JAL-2506 relocate Uniprot binding classes, bind to UniprotFeature not

[jalview.git] / src / jalview / datamodel / xdb / uniprot / UniprotEntry.java

diff --git a/src/jalview/datamodel/xdb/uniprot/UniprotEntry.java b/src/jalview/datamodel/xdb/uniprot/UniprotEntry.java
new file mode 100755 (executable)
index 0000000..a3537c9
--- /dev/null
+++ b/src/jalview/datamodel/xdb/uniprot/UniprotEntry.java
@@ -0,0 +1,107 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.datamodel.xdb.uniprot;
+
+import jalview.datamodel.PDBEntry;
+
+import java.util.Vector;
+
+/**
+ * Data model for an entry returned from a Uniprot query
+ * 
+ * @see uniprot_mapping.xml
+ */
+public class UniprotEntry
+{
+
+  UniprotSequence sequence;
+
+  Vector<String> name;
+
+  Vector<String> accession;
+
+  Vector<UniprotFeature> feature;
+
+  Vector<PDBEntry> dbrefs;
+
+  UniprotProteinName protName;
+
+  public void setAccession(Vector<String> items)
+  {
+    accession = items;
+  }
+
+  public void setFeature(Vector<UniprotFeature> items)
+  {
+    feature = items;
+  }
+
+  public Vector<UniprotFeature> getFeature()
+  {
+    return feature;
+  }
+
+  public Vector<String> getAccession()
+  {
+    return accession;
+  }
+
+  public void setProtein(UniprotProteinName names)
+  {
+    protName = names;
+  }
+
+  public UniprotProteinName getProtein()
+  {
+    return protName;
+  }
+
+  public void setName(Vector<String> na)
+  {
+    name = na;
+  }
+
+  public Vector<String> getName()
+  {
+    return name;
+  }
+
+  public UniprotSequence getUniprotSequence()
+  {
+    return sequence;
+  }
+
+  public void setUniprotSequence(UniprotSequence seq)
+  {
+    sequence = seq;
+  }
+
+  public Vector<PDBEntry> getDbReference()
+  {
+    return dbrefs;
+  }
+
+  public void setDbReference(Vector<PDBEntry> dbref)
+  {
+    this.dbrefs = dbref;
+  }
+
+}