Merge branch 'feature/JAL-3063JAXB' into Jalview-BH/JAL-3026-JAL-3063-JAXB

[jalview.git] / src / jalview / datamodel / xdb / uniprot / UniprotFeature.java

diff --git a/src/jalview/datamodel/xdb/uniprot/UniprotFeature.java b/src/jalview/datamodel/xdb/uniprot/UniprotFeature.java
deleted file mode 100644 (file)
index 4c2ae24..0000000
--- a/src/jalview/datamodel/xdb/uniprot/UniprotFeature.java
+++ /dev/null
@@ -1,134 +0,0 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License
- * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
- */
-package jalview.datamodel.xdb.uniprot;
-
-/**
- * A data model class for binding from Uniprot XML via uniprot_mapping.xml
- */
-public class UniprotFeature
-{
-  private String type;
-
-  private String description = null;
-
-  private String original = null;
-
-  private String variation = null;
-
-  private String status;
-
-  private int begin;
-
-  private int end;
-
-  public String getType()
-  {
-    return type;
-  }
-
-  public void setType(String t)
-  {
-    this.type = t;
-  }
-
-  public String getDescription()
-  {
-    if (description == null && variation == null && original == null)
-    {
-      return null;
-    }
-    return (description == null ? "" : description)
-            + (variation != null
-                    ? (description != null ? " " : "") + "Variation: '"
-                            + variation + "'"
-                    : "")
-            + (original != null
-                    ? ((description != null || variation != null) ? " "
-                            : "") + "Original: '" + original + "'"
-                    : "");
-  }
-
-  public void setDescription(String d)
-  {
-    this.description = d;
-  }
-
-  public String getStatus()
-  {
-    return status;
-  }
-
-  public void setStatus(String s)
-  {
-    this.status = s;
-  }
-
-  public int getBegin()
-  {
-    return begin;
-  }
-
-  public void setBegin(int b)
-  {
-    this.begin = b;
-  }
-
-  public int getEnd()
-  {
-    return end;
-  }
-
-  public void setEnd(int e)
-  {
-    this.end = e;
-  }
-
-  public int getPosition()
-  {
-    return begin;
-  }
-
-  public void setPosition(int p)
-  {
-    this.begin = p;
-    this.end = p;
-  }
-
-  public String getOriginal()
-  {
-    return original;
-  }
-
-  public void setOriginal(String original)
-  {
-    this.original = original;
-  }
-
-  public String getVariation()
-  {
-    return variation;
-  }
-
-  public void setVariation(String variant)
-  {
-    this.variation = variant;
-  }
-}