JAL-1705 fetch all Ensembl xrefs (except GO terms)

[jalview.git] / src / jalview / ext / ensembl / EnsemblCdna.java

diff --git a/src/jalview/ext/ensembl/EnsemblCdna.java b/src/jalview/ext/ensembl/EnsemblCdna.java
index 856be74..e141db4 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblCdna.java
+++ b/src/jalview/ext/ensembl/EnsemblCdna.java
@@ -4,9 +4,6 @@ import jalview.datamodel.SequenceFeature;
 import jalview.io.gff.SequenceOntologyFactory;
 import jalview.io.gff.SequenceOntologyI;
 
-import java.util.Arrays;
-import java.util.List;
-
 import com.stevesoft.pat.Regex;
 
 /**
@@ -19,9 +16,6 @@ import com.stevesoft.pat.Regex;
  */
 public class EnsemblCdna extends EnsemblSeqProxy
 {
-  private static final List<String> CROSS_REFERENCES = Arrays
-          .asList(new String[] { "Uniprot/SWISSPROT", "Uniprot/SPTREMBL" });
-
   /*
    * accepts ENST or ENSTG with 11 digits
    * or ENSMUST or similar for other species
@@ -114,12 +108,4 @@ public class EnsemblCdna extends EnsemblSeqProxy
     return false;
   }
 
-  @Override
-  protected List<String> getCrossReferenceDatabases()
-  {
-    return CROSS_REFERENCES;
-    // 30/01/16 also found Vega_transcript, OTTT, ENS_LRG_transcript, UCSC,
-    // HGNC_trans_name, RefSeq_mRNA, RefSeq_mRNA_predicted
-  }
-
 }