JAL-2525 put in missing "transcript" feature type

[jalview.git] / src / jalview / ext / ensembl / EnsemblGene.java

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index 223e54a..2d4d61a 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -274,7 +274,8 @@ public class EnsemblGene extends EnsemblSeqProxy
      * (it is a sub-type of sequence_variant)    
      */
     String[] soTerms = new String[] {
-        SequenceOntologyI.NMD_TRANSCRIPT_VARIANT, SequenceOntologyI.EXON,
+        SequenceOntologyI.NMD_TRANSCRIPT_VARIANT,
+        SequenceOntologyI.TRANSCRIPT, SequenceOntologyI.EXON,
         SequenceOntologyI.CDS };
     List<SequenceFeature> sfs = gene.getFeatures().getFeaturesByOntology(
             soTerms);