JAL-1705 fetch all Ensembl xrefs (except GO terms)

[jalview.git] / src / jalview / ext / ensembl / EnsemblGene.java

diff --git a/src/jalview/ext/ensembl/EnsemblGene.java b/src/jalview/ext/ensembl/EnsemblGene.java
index fa1e474..0bc6a74 100644 (file)
--- a/src/jalview/ext/ensembl/EnsemblGene.java
+++ b/src/jalview/ext/ensembl/EnsemblGene.java
@@ -29,9 +29,6 @@ import com.stevesoft.pat.Regex;
  */
 public class EnsemblGene extends EnsemblSeqProxy
 {
-  private static final List<String> CROSS_REFERENCES = Arrays
-          .asList(new String[] { "CCDS" });
-
   private static final String GENE_PREFIX = "gene:";
 
   /*
@@ -465,15 +462,6 @@ public class EnsemblGene extends EnsemblSeqProxy
     return false;
   }
 
-  @Override
-  protected List<String> getCrossReferenceDatabases()
-  {
-    // found these for ENSG00000157764 on 30/01/2016:
-    // return new String[] {"Vega_gene", "OTTG", "ENS_LRG_gene", "ArrayExpress",
-    // "EntrezGene", "HGNC", "MIM_GENE", "MIM_MORBID", "WikiGene"};
-    return CROSS_REFERENCES;
-  }
-
   /**
    * Override to do nothing as Ensembl doesn't return a protein sequence for a
    * gene identifier